Factsheet for TraesCS4A01G179700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 17211514

gfp PMID: 17211514 doi

G Tardif, NA Kane, H Adam, L Labrie, G Major, P Gulick, F Sarhan, JF Laliberté

Institut Armand-Frappier, Institut national de la recherche scientifique, 531 boulevard des Prairies, Laval, Québec, Canada, H7V 1B7.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G139800.1	Wheat	cytosol	100.0	100.0
GSMUA_Achr6P14940_001	Banana	cytosol, mitochondrion, peroxisome	50.0	81.08
VIT_06s0004g05560.t01	Wine grape	cytosol	65.83	80.61
EER88159	Sorghum	cytosol	75.83	79.13
PGSC0003DMT400077993	Potato	cytosol	64.17	78.57
KRH23113	Soybean	cytosol	62.5	76.53
CDY33015	Canola	cytosol	59.17	73.96
KRH10213	Soybean	cytosol	60.0	73.47
Os11t0707700-01	Rice	cytosol	75.83	73.39
Bra002588.1-P	Field mustard	cytosol	58.33	72.92
CDX80298	Canola	cytosol	58.33	72.92
AT5G59140.1	Thale cress	cytosol	58.33	72.92
CDX88684	Canola	cytosol	57.5	71.88
CDX71133	Canola	cytosol	57.5	71.88
Bra006730.1-P	Field mustard	cytosol	57.5	71.88
Solyc06g076460.2.1	Tomato	cytosol	47.5	69.51
Zm00001d044753_P001	Maize	nucleus	76.67	64.34
TraesCS4D01G134500.1	Wheat	cytosol	80.83	64.24
Zm00001d037277_P001	Maize	cytosol	59.17	49.31

Protein Annotations

EnsemblPlants:TraesCS4A01G179700.1	EnsemblPlantsGene:TraesCS4A01G179700	Gene3D:3.30.710.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	InterPro:SKP1-like	InterPro:SKP1/BTB/POZ_sf	InterPro:Skp1_comp_POZ	PANTHER:PTHR20648
PANTHER:PTHR20648:SF0	PFAM:PF03931	SMART:SM00512	SUPFAM:SSF54695	MapMan:35.2	:

Description

No Description!

Coordinates

chr4A:+:453440640..453443472

Molecular Weight (calculated)

13253.7 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.192

Length

120 amino acids

Sequence
(BLAST)

001: MVGKGGEAAA SAQHKEEHEE DGDMVGVVKL ISAEGFEFVI DKKAAMVSNT LRNMLTSPGG FAETREGEVR FPEISTAILE KICQYFYWSL HYASGKETAE
101: FPIEPEITLE LMMAANYLDT

Best Arabidopsis Sequence Match ( AT5G59140.1 )
(BLAST)

1: MRETVKLISM EGFEFVIDRE AAMVSQTIRS MLTSPGGFSE SKDGVVTFPD ISTTILEKIC QYFYWSLQYS RGKETEFHIE PELTLELMMA ANYLHT

Arabidopsis Description

BTB/POZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FIG0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.