Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88159 | Sorghum | cytosol | 54.17 | 67.83 |
| Solyc06g076460.2.1 | Tomato | cytosol | 35.42 | 62.2 |
| Os11t0707700-01 | Rice | cytosol | 52.08 | 60.48 |
| Zm00001d044753_P001 | Maize | nucleus | 59.03 | 59.44 |
| AT5G59140.1 | Thale cress | cytosol | 39.58 | 59.38 |
| CDX80298 | Canola | cytosol | 39.58 | 59.38 |
| CDY33015 | Canola | cytosol | 39.58 | 59.38 |
| TraesCS4B01G139800.1 | Wheat | cytosol | 49.31 | 59.17 |
| TraesCS4A01G179700.1 | Wheat | cytosol, nucleus | 49.31 | 59.17 |
| Bra002588.1-P | Field mustard | cytosol | 38.89 | 58.33 |
| CDX88684 | Canola | cytosol | 38.89 | 58.33 |
| CDX71133 | Canola | cytosol | 38.89 | 58.33 |
| Bra006730.1-P | Field mustard | cytosol | 38.89 | 58.33 |
| GSMUA_Achr6P14940_001 | Banana | cytosol, mitochondrion, peroxisome | 29.86 | 58.11 |
| VIT_06s0004g05560.t01 | Wine grape | cytosol | 38.89 | 57.14 |
| KRH23113 | Soybean | cytosol | 38.19 | 56.12 |
| PGSC0003DMT400077993 | Potato | cytosol | 38.19 | 56.12 |
| KRH10213 | Soybean | cytosol | 36.81 | 54.08 |
| TraesCS4D01G134500.1 | Wheat | cytosol | 47.22 | 45.03 |
Protein Annotations
| EntrezGene:100283809 | Gene3D:3.30.710.10 | MapMan:35.2 | UniProt:A0A1D6LW48 | ProteinID:AQK83475.1 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | PFAM:PF03931 |
| PANTHER:PTHR20648 | PANTHER:PTHR20648:SF0 | InterPro:SKP1-like | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| InterPro:Skp1_comp_POZ | UniParc:UPI000842E42C | EnsemblPlantsGene:Zm00001d037277 | EnsemblPlants:Zm00001d037277_P001 | EnsemblPlants:Zm00001d037277_T001 | SEG:seg |
Description
Elongin C%3B Elongin isoform 1%3B Elongin isoform 2
Coordinates
chr6:+:119165310..119170891
Molecular Weight (calculated)
16415.4 Da
IEP (calculated)
5.999
GRAVY (calculated)
-0.558
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPREHHQP QDEEDDDTAG VVKLISAEGF EFVVDRKAAM VSNTLRNMLT SPGGFSETRQ GEVRFPEIPT NILEKICQYF YWSLHYSRFL CLLSTFDNRH
101: LLSPFRLSPW EGDSGVSNRT GDNPGAYDGR KLSGHLMRSL RDLI
101: LLSPFRLSPW EGDSGVSNRT GDNPGAYDGR KLSGHLMRSL RDLI
1: MRETVKLISM EGFEFVIDRE AAMVSQTIRS MLTSPGGFSE SKDGVVTFPD ISTTILEKIC QYFYWSLQYS RGKETEFHIE PELTLELMMA ANYLHT
Arabidopsis Description
BTB/POZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FIG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.