Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P14940_001 | Banana | cytosol, mitochondrion, peroxisome | 50.0 | 83.78 |
| EER88159 | Sorghum | cytosol | 76.61 | 82.61 |
| PGSC0003DMT400077993 | Potato | cytosol | 60.48 | 76.53 |
| TraesCS4B01G139800.1 | Wheat | cytosol | 73.39 | 75.83 |
| TraesCS4A01G179700.1 | Wheat | cytosol, nucleus | 73.39 | 75.83 |
| VIT_06s0004g05560.t01 | Wine grape | cytosol | 59.68 | 75.51 |
| KRH23113 | Soybean | cytosol | 59.68 | 75.51 |
| CDY33015 | Canola | cytosol | 58.06 | 75.0 |
| Bra002588.1-P | Field mustard | cytosol | 57.26 | 73.96 |
| CDX80298 | Canola | cytosol | 57.26 | 73.96 |
| AT5G59140.1 | Thale cress | cytosol | 57.26 | 73.96 |
| KRH10213 | Soybean | cytosol | 58.06 | 73.47 |
| CDX88684 | Canola | cytosol | 56.45 | 72.92 |
| CDX71133 | Canola | cytosol | 56.45 | 72.92 |
| Bra006730.1-P | Field mustard | cytosol | 56.45 | 72.92 |
| Solyc06g076460.2.1 | Tomato | cytosol | 43.55 | 65.85 |
| Zm00001d044753_P001 | Maize | nucleus | 73.39 | 63.64 |
| Zm00001d037277_P001 | Maize | cytosol | 60.48 | 52.08 |
| TraesCS4D01G134500.1 | Wheat | cytosol | 57.26 | 47.02 |
Protein Annotations
| Gene3D:3.30.710.10 | MapMan:35.2 | EntrezGene:4351227 | ProteinID:AAX95420.1 | ProteinID:ABA95529.1 | EMBL:AK064106 |
| ProteinID:BAF28921.1 | ProteinID:BAT15424.1 | ProteinID:EEE52584.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0032968 | GO:GO:0070449 | EnsemblPlantsGene:Os11g0707700 | EnsemblPlants:Os11t0707700-01 | PFAM:PF03931 | PANTHER:PTHR20648 |
| PANTHER:PTHR20648:SF0 | UniProt:Q53NW5 | InterPro:SKP1-like | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| InterPro:Skp1_comp_POZ | UniParc:UPI00005092BE | RefSeq:XP_015616795.1 | SEG:seg | : | : |
Description
Similar to Elongin C (Fragment). (Os11t0707700-01)
Coordinates
chr11:-:28957910..28960502
Molecular Weight (calculated)
13932.3 Da
IEP (calculated)
4.364
GRAVY (calculated)
-0.500
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRKGEAPGH QTPPHLHKDD GDDDDDAPSG FVKLISAEGF EFVVDKKAAM VSNTLRNMLT SPGGFSETRE GEVRFPEIST PILEKICQYF YWSLHYSSGK
101: ETSEFQIEPE ITLELMMAAN YLDT
101: ETSEFQIEPE ITLELMMAAN YLDT
1: MRETVKLISM EGFEFVIDRE AAMVSQTIRS MLTSPGGFSE SKDGVVTFPD ISTTILEKIC QYFYWSLQYS RGKETEFHIE PELTLELMMA ANYLHT
Arabidopsis Description
BTB/POZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FIG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.