Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P14940_001 | Banana | cytosol, mitochondrion, peroxisome | 69.39 | 91.89 |
| Solyc06g076460.2.1 | Tomato | cytosol | 74.49 | 89.02 |
| VIT_06s0004g05560.t01 | Wine grape | cytosol | 87.76 | 87.76 |
| KRH23113 | Soybean | cytosol | 86.73 | 86.73 |
| KRH10213 | Soybean | cytosol | 85.71 | 85.71 |
| Bra006730.1-P | Field mustard | cytosol | 80.61 | 82.29 |
| CDX71133 | Canola | cytosol | 80.61 | 82.29 |
| CDX88684 | Canola | cytosol | 80.61 | 82.29 |
| AT5G59140.1 | Thale cress | cytosol | 79.59 | 81.25 |
| CDX80298 | Canola | cytosol | 79.59 | 81.25 |
| CDY33015 | Canola | cytosol | 79.59 | 81.25 |
| Bra002588.1-P | Field mustard | cytosol | 78.57 | 80.21 |
| TraesCS4A01G179700.1 | Wheat | cytosol, nucleus | 78.57 | 64.17 |
| TraesCS4B01G139800.1 | Wheat | cytosol | 78.57 | 64.17 |
| EER88159 | Sorghum | cytosol | 74.49 | 63.48 |
| Os11t0707700-01 | Rice | cytosol | 76.53 | 60.48 |
| Zm00001d044753_P001 | Maize | nucleus | 74.49 | 51.05 |
| TraesCS4D01G134500.1 | Wheat | cytosol | 61.22 | 39.74 |
| Zm00001d037277_P001 | Maize | cytosol | 56.12 | 38.19 |
Protein Annotations
| EntrezGene:102603521 | Gene3D:3.30.710.10 | MapMan:35.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | UniProt:M1CZ69 | PFAM:PF03931 | EnsemblPlantsGene:PGSC0003DMG400030334 | PGSC:PGSC0003DMG400030334 |
| EnsemblPlants:PGSC0003DMT400077993 | PANTHER:PTHR20648 | InterPro:SKP1-like | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| InterPro:Skp1_comp_POZ | UniParc:UPI000296BED3 | RefSeq:XP_006350794.1 | : | : | : |
Description
Transcription elongation factor B polypeptide [Source:PGSC_GENE;Acc:PGSC0003DMG400030334]
Coordinates
chr6:+:56845461..56850790
Molecular Weight (calculated)
11342.6 Da
IEP (calculated)
4.850
GRAVY (calculated)
-0.249
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MKKEDTVKLI SREGFEFIID KKAAMVSQTI RNMLTSPGSF AETEHGQVTF PEINTTILEK ICQYFYWSLQ YASGKETEFH IEPEITLELM MAANYLHT
1: MRETVKLISM EGFEFVIDRE AAMVSQTIRS MLTSPGGFSE SKDGVVTFPD ISTTILEKIC QYFYWSLQYS RGKETEFHIE PELTLELMMA ANYLHT
Arabidopsis Description
BTB/POZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FIG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.