Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G199500.1 | Wheat | nucleus | 100.0 | 100.0 |
| EER92016 | Sorghum | nucleus | 96.27 | 96.88 |
| TraesCS1B01G214400.2 | Wheat | nucleus | 100.0 | 95.83 |
| Zm00001d047354_P001 | Maize | nucleus | 93.79 | 94.38 |
| Os10t0536000-01 | Rice | cytosol | 93.17 | 93.75 |
| TraesCS4D01G341600.2 | Wheat | cytosol | 92.55 | 92.55 |
| GSMUA_Achr3P05370_001 | Banana | cytosol | 91.3 | 91.88 |
| KRH04554 | Soybean | nucleus | 89.44 | 90.0 |
| KRH57897 | Soybean | nucleus | 89.44 | 90.0 |
| KRH28435 | Soybean | cytosol | 88.82 | 89.94 |
| VIT_07s0031g00160.t01 | Wine grape | nucleus | 90.06 | 89.51 |
| HORVU1Hr1G051610.3 | Barley | nucleus | 98.76 | 89.33 |
| KRH77039 | Soybean | cytosol | 88.2 | 89.31 |
| Solyc02g093110.2.1 | Tomato | nucleus | 88.2 | 88.75 |
| GSMUA_Achr9P14150_001 | Banana | nucleus | 87.58 | 88.12 |
| Solyc03g044260.2.1 | Tomato | nucleus | 87.58 | 88.12 |
| AT3G57870.1 | Thale cress | cytosol | 86.34 | 86.88 |
| CDX93982 | Canola | cytosol | 83.23 | 83.75 |
| Bra014406.1-P | Field mustard | cytosol | 82.61 | 83.12 |
| CDY66302 | Canola | cytosol | 82.61 | 83.12 |
| PGSC0003DMT400016581 | Potato | nucleus | 81.99 | 78.57 |
| PGSC0003DMT400025497 | Potato | extracellular | 63.98 | 74.64 |
| VIT_18s0001g10100.t01 | Wine grape | nucleus | 81.37 | 67.18 |
| Solyc07g021670.1.1 | Tomato | cytosol, mitochondrion | 24.22 | 65.0 |
| PGSC0003DMT400014261 | Potato | nucleus | 31.68 | 55.43 |
| TraesCS2D01G393100.2 | Wheat | endoplasmic reticulum | 53.42 | 49.43 |
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 32.3 | 30.77 |
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 31.06 | 29.59 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 32.92 | 27.46 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF4 |
| SMART:SM00212 | SUPFAM:SSF54495 | EnsemblPlantsGene:TraesCS1D01G203200 | EnsemblPlants:TraesCS1D01G203200.1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | InterPro:Ubc9 | TIGR:cd00195 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:286751730..286754371
Molecular Weight (calculated)
18063.5 Da
IEP (calculated)
8.460
GRAVY (calculated)
-0.541
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGIARGR LAEERKAWRK NHPHGFVAKP ETVADGSVNL MIWNCTIPGK QGTDWESGYY PLTLHFSEDY PSKPPKCKFP QGFFHPNVYP SGTVCLSILN
101: EDSGWRPAIT VKQILVGIQD LLDQPNPADP AQTDGYHLFI QDPAEYKRRI RLQAKQYPAL V
101: EDSGWRPAIT VKQILVGIQD LLDQPNPADP AQTDGYHLFI QDPAEYKRRI RLQAKQYPAL V
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.