Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_11s0016g02850.t01 | |
| VIT_13s0019g02260.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57870.1 | VIT_13s0019g02260.t01 | AT2G39760.1 | 21798944 |
| AT3G57870.1 | VIT_11s0016g02850.t01 | AT5G56630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57897 | Soybean | nucleus | 94.44 | 95.62 |
| KRH04554 | Soybean | nucleus | 94.44 | 95.62 |
| KRH28435 | Soybean | cytosol | 93.83 | 95.6 |
| KRH77039 | Soybean | cytosol | 93.21 | 94.97 |
| GSMUA_Achr1P03640_001 | Banana | nucleus | 93.21 | 94.38 |
| EER95612 | Sorghum | nucleus | 91.98 | 93.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 91.98 | 93.12 |
| Zm00001d027427_P001 | Maize | nucleus | 91.98 | 93.12 |
| Os03t0123100-01 | Rice | cytosol | 91.36 | 92.5 |
| TraesCS4D01G341600.2 | Wheat | cytosol | 91.36 | 91.93 |
| TraesCS4B01G346600.2 | Wheat | cytosol | 91.36 | 91.93 |
| TraesCS5A01G515400.1 | Wheat | cytosol | 91.36 | 91.93 |
| GSMUA_Achr3P05370_001 | Banana | cytosol | 90.74 | 91.88 |
| Zm00001d048473_P003 | Maize | nucleus | 90.74 | 91.88 |
| Zm00001d047354_P001 | Maize | nucleus | 90.12 | 91.25 |
| EER92016 | Sorghum | nucleus | 90.12 | 91.25 |
| Solyc03g044260.2.1 | Tomato | nucleus | 90.12 | 91.25 |
| TraesCS1A01G199500.1 | Wheat | nucleus | 89.51 | 90.06 |
| TraesCS1D01G203200.1 | Wheat | nucleus | 89.51 | 90.06 |
| Os10t0536000-01 | Rice | cytosol | 88.27 | 89.38 |
| Solyc02g093110.2.1 | Tomato | nucleus | 87.65 | 88.75 |
| TraesCS1B01G214400.2 | Wheat | nucleus | 89.51 | 86.31 |
| GSMUA_Achr9P14150_001 | Banana | nucleus | 85.19 | 86.25 |
| CDX93982 | Canola | cytosol | 85.19 | 86.25 |
| AT3G57870.1 | Thale cress | cytosol | 85.19 | 86.25 |
| Bra014406.1-P | Field mustard | cytosol | 84.57 | 85.62 |
| CDY66302 | Canola | cytosol | 84.57 | 85.62 |
| Zm00001d029740_P002 | Maize | nucleus | 83.95 | 85.0 |
| PGSC0003DMT400016581 | Potato | nucleus | 83.95 | 80.95 |
| HORVU1Hr1G051610.3 | Barley | nucleus | 88.89 | 80.9 |
| HORVU4Hr1G084760.5 | Barley | plastid | 88.27 | 74.09 |
| VIT_18s0001g10100.t01 | Wine grape | nucleus | 82.72 | 68.72 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 35.19 | 32.2 |
| VIT_13s0019g00910.t01 | Wine grape | plastid | 32.1 | 30.95 |
| VIT_08s0007g00120.t01 | Wine grape | mitochondrion | 31.48 | 30.36 |
| VIT_06s0004g04430.t01 | Wine grape | cytosol, nucleus, plastid | 31.48 | 30.0 |
| VIT_13s0019g04090.t01 | Wine grape | cytosol | 31.48 | 26.84 |
Protein Annotations
| EntrezGene:100242395 | wikigene:100242395 | EntrezGene:100262698 | wikigene:100262698 | MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 |
| EMBL:AM448784 | ProteinID:CAN61018 | ProteinID:CAN61018.1 | ProteinID:CBI21382 | ProteinID:CBI21382.3 | UniProt:D7SVT3 |
| EMBL:FN595233 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016925 | GO:GO:0019538 |
| GO:GO:0019789 | InterPro:IPR000608 | InterPro:IPR016135 | EntrezGene:LOC100242395 | wikigene:LOC100242395 | EntrezGene:LOC100262698 |
| wikigene:LOC100262698 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF4 |
| SMART:SM00212 | SUPFAM:SSF54495 | TIGR:TC52360 | TIGR:TC66700 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00015CA093 | InterPro:Ubc9 | ArrayExpress:VIT_07s0031g00160 | EnsemblPlantsGene:VIT_07s0031g00160 | EnsemblPlants:VIT_07s0031g00160.t01 |
| unigene:Vvi.6899 | RefSeq:XP_002283130 | RefSeq:XP_002283130.1 | : | : | : |
Description
No Description!
Coordinates
chr7:+:16377984..16385041
Molecular Weight (calculated)
18319.9 Da
IEP (calculated)
8.460
GRAVY (calculated)
-0.581
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAGIARGRL MEERKAWRKN HPHGFVAKPE TLPDGQVNLM VWQCTIPGKP GTDWEGGYFP LTLHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTEGYHLFIQ DAAEYKRRVR QQAKQYPPLV GY
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTEGYHLFIQ DAAEYKRRVR QQAKQYPPLV GY
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.