Factsheet for GSMUA_AchrUn_randomP04670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P04940_001
GSMUA_Achr2P16600_001
GSMUA_Achr4P01040_001
GSMUA_Achr4P08240_001
GSMUA_Achr4P15420_001
GSMUA_Achr7P10650_001
GSMUA_Achr7P10770_001
GSMUA_Achr7P13640_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	GSMUA_Achr10P...	AT2G39760.1	21798944
AT3G57870.1	GSMUA_Achr7P10650_001	AT2G39760.1	21798944
AT3G57870.1	GSMUA_Achr1P04940_001	AT5G56630.1	21798944
AT3G57870.1	GSMUA_Achr2P16600_001	AT5G56630.1	21798944
AT3G57870.1	GSMUA_Achr4P01040_001	AT5G56630.1	21798944
AT3G57870.1	GSMUA_Achr4P08240_001	AT5G56630.1	21798944
AT3G57870.1	GSMUA_Achr4P15420_001	AT5G56630.1	21798944
AT3G57870.1	GSMUA_Achr7P10770_001	AT5G56630.1	21798944
AT3G57870.1	GSMUA_Achr7P13640_001	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03640_001	Banana	nucleus	96.88	96.88
EER95612	Sorghum	nucleus	95.62	95.62
Os03t0123100-01	Rice	cytosol	95.0	95.0
Zm00001d048473_P003	Maize	nucleus	94.38	94.38
Zm00001d027427_P001	Maize	nucleus	94.38	94.38
KRH57897	Soybean	nucleus	94.38	94.38
KRH04554	Soybean	nucleus	94.38	94.38
KRH28435	Soybean	cytosol	93.12	93.71
KRH77039	Soybean	cytosol	92.5	93.08
GSMUA_Achr3P05370_001	Banana	cytosol	92.5	92.5
VIT_07s0031g00160.t01	Wine grape	nucleus	93.12	91.98
Solyc03g044260.2.1	Tomato	nucleus	90.0	90.0
Solyc02g093110.2.1	Tomato	nucleus	90.0	90.0
AT3G57870.1	Thale cress	cytosol	88.12	88.12
GSMUA_Achr9P14150_001	Banana	nucleus	88.12	88.12
Bra014406.1-P	Field mustard	cytosol	84.38	84.38
CDY66302	Canola	cytosol	84.38	84.38
CDX93982	Canola	cytosol	83.75	83.75
PGSC0003DMT400016581	Potato	nucleus	85.0	80.95
PGSC0003DMT400025497	Potato	extracellular	65.0	75.36
VIT_18s0001g10100.t01	Wine grape	nucleus	84.38	69.23
Solyc07g021670.1.1	Tomato	cytosol, mitochondrion	25.62	68.33
PGSC0003DMT400014261	Potato	nucleus	33.12	57.61
GSMUA_Achr10P...	Banana	cytosol	27.5	33.59
GSMUA_Achr6P34220_001	Banana	plastid	32.5	30.95
GSMUA_Achr3P08740_001	Banana	cytosol	34.38	30.22
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	31.25	29.76
GSMUA_Achr5P08370_001	Banana	cytosol	25.0	29.41
GSMUA_Achr9P17810_001	Banana	cytosol	33.75	29.19
GSMUA_Achr7P22730_001	Banana	cytosol	31.88	27.87
GSMUA_Achr5P08330_001	Banana	extracellular, golgi, vacuole	13.75	23.16

Protein Annotations

MapMan:19.2.2.2.3	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016925	GO:GO:0019538	GO:GO:0019789	EnsemblPlantsGene:GSMUA_AchrUn_randomG04670_001	EnsemblPlants:GSMUA_AchrUn_randomP04670_001	EnsemblPlants:GSMUA_AchrUn_randomT04670_001
InterPro:IPR000608	InterPro:IPR016135	UniProt:M0U6C9	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000295B169	InterPro:Ubc9	:	:	:

Description

SUMO-conjugating enzyme SCE1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04670_001]

Coordinates

chrchrUn_random:+:18600082..18604392

Molecular Weight (calculated)

18066.5 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.622

Length

160 amino acids

Sequence
(BLAST)

001: MSGGIARGRL AEERKAWRKN HPHGFVAKPE TLPDGSVNLM TWHCTIPGKQ GTDWEGGYFP LTVHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTDGYHLFIQ DPVEYKRRVR QQAKQYPPLL

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.