Factsheet for GSMUA_Achr9P17810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P08740_001	Banana	cytosol	86.49	87.91
VIT_06s0061g00070.t01	Wine grape	cytosol	73.51	76.84
CDY45063	Canola	cytosol	52.97	76.56
Bra030487.1-P	Field mustard	cytosol, plastid	70.27	74.71
CDY29588	Canola	cytosol, plastid	70.27	74.29
PGSC0003DMT400080256	Potato	cytosol, plastid	71.35	74.16
CDY62105	Canola	cytosol, plastid	69.73	73.71
Solyc11g065190.1.1	Tomato	plastid	71.35	72.93
AT1G50490.1	Thale cress	plastid	70.81	72.78
TraesCS3A01G186500.1	Wheat	cytosol, plastid	72.97	72.58
Bra035819.1-P	Field mustard	cytosol, plastid	70.81	72.38
CDY33445	Canola	nucleus	70.81	72.38
AT3G20060.1	Thale cress	plastid	70.27	71.82
CDY42228	Canola	plastid	70.27	71.82
Bra018852.1-P	Field mustard	cytosol, plastid	70.27	71.82
Bra038253.1-P	Field mustard	nucleus	70.27	71.82
CDY22799	Canola	cytosol, plastid	70.27	71.82
CDY37132	Canola	cytosol, plastid	70.27	71.82
CDY25375	Canola	plastid	70.27	71.43
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	70.27	71.43
Os01t0273100-01	Rice	plastid	73.51	71.2
GSMUA_Achr10P...	Banana	cytosol	50.27	70.99
KXG32249	Sorghum	plastid	70.27	70.65
KRH24100	Soybean	cytosol, plastid	68.65	70.56
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	69.73	70.49
HORVU3Hr1G038430.3	Barley	nucleus, plastid	68.11	66.67
TraesCS3D01G190400.2	Wheat	nucleus, plastid	68.11	65.28
OQU80782	Sorghum	nucleus, plastid	65.95	64.89
GSMUA_Achr7P22730_001	Banana	cytosol	61.08	61.75
TraesCS3B01G216000.2	Wheat	plastid	72.97	61.64
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	59.46	60.77
Bra014255.1-P	Field mustard	cytosol	53.51	60.37
CDY03608	Canola	nucleus	31.89	50.0
Zm00001d008261_P003	Maize	nucleus	56.76	41.34
GSMUA_Achr1P03640_001	Banana	nucleus	29.73	34.38
GSMUA_AchrUn_...	Banana	nucleus	29.19	33.75
GSMUA_Achr3P05370_001	Banana	cytosol	29.19	33.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	30.27	33.33
GSMUA_Achr6P34220_001	Banana	plastid	29.73	32.74
GSMUA_Achr5P08330_001	Banana	extracellular, golgi, vacuole	16.76	32.63
GSMUA_Achr9P14150_001	Banana	nucleus	27.57	31.88
GSMUA_Achr5P08370_001	Banana	cytosol	18.92	25.74

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr9G17810_001	EnsemblPlants:GSMUA_Achr9P17810_001	EnsemblPlants:GSMUA_Achr9T17810_001	InterPro:IPR000608
InterPro:IPR016135	UniProt:M0U188	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00029482DF
SEG:seg	:	:	:	:	:

Description

Ubiquitin-conjugating enzyme E2 19 [Source:GMGC_GENE;Acc:GSMUA_Achr9G17810_001]

Coordinates

chr9:+:12383600..12384953

Molecular Weight (calculated)

20429.4 Da

IEP (calculated)

6.345

GRAVY (calculated)

-0.350

Length

185 amino acids

Sequence
(BLAST)

001: MTRRENPDVH DNIPTTTPAA AATAPSAAKQ PAPVAKGHDG HSVLKRLQSE LMSLMMCGDP GISAFPEGDN IFCWKGTIHG SKETAYEGMV YKLSFAFPTD
101: YPMKPPKVKF ETACFHPNVD VYGNICLDIL QDKWSSAYDV RTILLSIQSL LGEPNNESPL NTQAAALWVN QEEFRKMVEK LCKPT

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.