CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32249	Sorghum	plastid	86.7	88.59
TraesCS3A01G186500.1	Wheat	cytosol, plastid	77.66	78.49
Os01t0273100-01	Rice	plastid	78.19	76.96
HORVU3Hr1G038430.3	Barley	nucleus, plastid	71.28	70.9
TraesCS3D01G190400.2	Wheat	nucleus, plastid	71.28	69.43
CDY45063	Canola	cytosol	46.81	68.75
Bra030487.1-P	Field mustard	cytosol, plastid	63.3	68.39
GSMUA_Achr3P08740_001	Banana	cytosol	65.96	68.13
CDY29588	Canola	cytosol, plastid	63.3	68.0
CDY62105	Canola	cytosol, plastid	62.77	67.43
TraesCS3B01G216000.2	Wheat	plastid	77.66	66.67
GSMUA_Achr9P17810_001	Banana	cytosol	64.89	65.95
CDY42228	Canola	plastid	63.3	65.75
AT1G50490.1	Thale cress	plastid	62.77	65.56
CDY37132	Canola	cytosol, plastid	62.77	65.19
CDY22799	Canola	cytosol, plastid	62.77	65.19
Bra038253.1-P	Field mustard	nucleus	62.77	65.19
Bra035819.1-P	Field mustard	cytosol, plastid	62.77	65.19
Bra018852.1-P	Field mustard	cytosol, plastid	62.77	65.19
CDY33445	Canola	nucleus	62.23	64.64
CDY25375	Canola	plastid	62.23	64.29
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	62.23	64.29
Solyc11g065190.1.1	Tomato	plastid	61.7	64.09
PGSC0003DMT400080256	Potato	cytosol, plastid	60.64	64.04
VIT_06s0061g00070.t01	Wine grape	cytosol	60.11	63.84
AT3G20060.1	Thale cress	plastid	60.64	62.98
KRH24100	Soybean	cytosol, plastid	59.57	62.22
Bra014255.1-P	Field mustard	cytosol	47.87	54.88
Zm00001d008261_P003	Maize	nucleus	70.74	52.36
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	48.94	50.83
CDY03608	Canola	nucleus	28.72	45.76
EER95612	Sorghum	nucleus	28.72	33.75
EER92016	Sorghum	nucleus	28.72	33.75
EES12706	Sorghum	mitochondrion	28.19	33.33
EES12705	Sorghum	mitochondrion	27.66	32.7
EES03856	Sorghum	cytosol, nucleus, plastid	29.26	32.54
KXG22164	Sorghum	cytosol, nucleus, plastid	27.13	29.65
OQU82197	Sorghum	cytosol	24.47	27.38

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EntrezGene:8060563	UniProt:A0A1Z5RAJ8	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135
EnsemblPlants:OQU80782	ProteinID:OQU80782	ProteinID:OQU80782.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR44189	SMART:SM00212	EnsemblPlantsGene:SORBI_3007G184001	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001A87CC0	RefSeq:XP_002444650.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:61746644..61748027

Molecular Weight (calculated)

20046.5 Da

IEP (calculated)

4.753

GRAVY (calculated)

-0.363

Length

188 amino acids

Sequence
(BLAST)

001: MARGENQEAQ SGNVPDASSA SAPKPASSSS SAGAGKGLEG QSVVRRLQSE LMALMMGGDP GVSAFPDPDG DSMLHWVGTI AGSAGTPYEG TSYRLALAFT
101: AEYPYKPPQV RFDTPCFHPN VDVHGNICLD ILQDKWSSAY DVRTVLLSIQ SLLGEPNNDS PLNTQAAALW ANQEEFRKMV QKLYKPAA

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.