Factsheet for Bra030487.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29588	Canola	cytosol, plastid	100.0	99.43
CDY62105	Canola	cytosol, plastid	98.85	98.29
Bra018852.1-P	Field mustard	cytosol, plastid	97.7	93.92
AT1G50490.1	Thale cress	plastid	95.4	92.22
Bra035819.1-P	Field mustard	cytosol, plastid	94.25	90.61
Bra038253.1-P	Field mustard	nucleus	90.8	87.29
VIT_06s0061g00070.t01	Wine grape	cytosol	82.76	81.36
KRH24100	Soybean	cytosol, plastid	83.91	81.11
PGSC0003DMT400080256	Potato	cytosol, plastid	82.76	80.9
Solyc11g065190.1.1	Tomato	plastid	83.91	80.66
GSMUA_Achr3P08740_001	Banana	cytosol	76.44	73.08
Bra014255.1-P	Field mustard	cytosol	67.24	71.34
GSMUA_Achr9P17810_001	Banana	cytosol	74.71	70.27
KXG32249	Sorghum	plastid	71.26	67.39
TraesCS3A01G186500.1	Wheat	cytosol, plastid	71.84	67.2
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	68.97	66.3
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	69.54	66.12
Os01t0273100-01	Rice	plastid	70.69	64.4
OQU80782	Sorghum	nucleus, plastid	68.39	63.3
HORVU3Hr1G038430.3	Barley	nucleus, plastid	66.09	60.85
TraesCS3D01G190400.2	Wheat	nucleus, plastid	66.09	59.59
TraesCS3B01G216000.2	Wheat	plastid	71.84	57.08
Zm00001d008261_P003	Maize	nucleus	57.47	39.37
Bra014602.1-P	Field mustard	cytosol	34.48	37.5
Bra007363.1-P	Field mustard	cytosol	34.48	37.5
Bra003301.1-P	Field mustard	cytosol	34.48	37.5
Bra014406.1-P	Field mustard	cytosol	33.91	36.88
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	33.33	34.73
Bra003210.1-P	Field mustard	nucleus	32.76	34.13
Bra002579.1-P	Field mustard	cytosol	29.31	32.08
Bra020324.1-P	Field mustard	nucleus	30.46	31.18
Bra007157.1-P	Field mustard	nucleus	29.89	31.14

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra030487	EnsemblPlants:Bra030487.1	EnsemblPlants:Bra030487.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4ENW7	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44189
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001BA8565

Description

AT1G50490 (E=3e-092) UBC20 | UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase

Coordinates

chrA05:+:11826768..11827853

Molecular Weight (calculated)

19291.9 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.373

Length

174 amino acids

Sequence
(BLAST)

001: MAAVNGYQGN TPAASKQSAP LTKTVDSQSV LKRLQSELMG LMMGGDPGIS AFPEEDNIFC WKGTITGSKD TVFEGTEYRL SLSFSNDYPF KPPKIKFHTG
101: CFHPNVDVYG NICLDILQDK WSSAYDVRTI LLSIQSLLGE PNISSPLNTQ AAQLWSNQEE YRKMVEKLYK PPSA

Best Arabidopsis Sequence Match ( AT1G50490.1 )
(BLAST)

001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA

Arabidopsis Description

UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.