CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29588	Canola	cytosol, plastid	98.86	98.86
Bra030487.1-P	Field mustard	cytosol, plastid	98.29	98.85
CDY37132	Canola	cytosol, plastid	98.29	95.03
CDY22799	Canola	cytosol, plastid	98.29	95.03
AT1G50490.1	Thale cress	plastid	94.86	92.22
CDY25375	Canola	plastid	94.86	91.21
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	94.29	90.66
CDY42228	Canola	plastid	92.0	88.95
CDY33445	Canola	nucleus	91.43	88.4
CDY45063	Canola	cytosol	64.57	88.28
VIT_06s0061g00070.t01	Wine grape	cytosol	82.29	81.36
KRH24100	Soybean	cytosol, plastid	83.43	81.11
PGSC0003DMT400080256	Potato	cytosol, plastid	81.71	80.34
Solyc11g065190.1.1	Tomato	plastid	82.86	80.11
GSMUA_Achr3P08740_001	Banana	cytosol	76.0	73.08
GSMUA_Achr9P17810_001	Banana	cytosol	73.71	69.73
TraesCS3A01G186500.1	Wheat	cytosol, plastid	71.43	67.2
KXG32249	Sorghum	plastid	70.29	66.85
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	68.57	66.3
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	68.57	65.57
CDY03608	Canola	nucleus	44.0	65.25
Os01t0273100-01	Rice	plastid	70.29	64.4
OQU80782	Sorghum	nucleus, plastid	67.43	62.77
HORVU3Hr1G038430.3	Barley	nucleus, plastid	65.71	60.85
TraesCS3D01G190400.2	Wheat	nucleus, plastid	65.71	59.59
TraesCS3B01G216000.2	Wheat	plastid	71.43	57.08
Zm00001d008261_P003	Maize	nucleus	56.57	38.98
CDX98253	Canola	cytosol	34.29	37.5
CDY70581	Canola	cytosol	34.29	37.5
CDY47661	Canola	cytosol	34.29	37.5
CDX67711	Canola	cytosol	34.29	37.5
CDX88967	Canola	cytosol	34.29	37.5
CDX71988	Canola	nucleus	34.29	37.5
CDY66302	Canola	cytosol	33.71	36.88
CDX93982	Canola	cytosol	33.71	36.88
CDY62383	Canola	nucleus	32.57	34.13
CDY02931	Canola	cytosol, nucleus, plastid	32.57	34.13
CDX76101	Canola	cytosol, nucleus, plastid	32.57	34.13
CDY53695	Canola	nucleus	32.57	34.13
CDX73361	Canola	extracellular	16.57	31.52
CDY32651	Canola	nucleus	30.29	31.18
CDY40214	Canola	nucleus	29.71	31.14
CDY41239	Canola	nucleus	29.71	31.14
CDY33025	Canola	cytosol	29.14	30.91
CDY02882	Canola	cytosol, mitochondrion, nucleus	29.71	30.59
CDX80292	Canola	cytosol	29.71	29.05

Protein Annotations

MapMan:13.3.4.1.2	Gene3D:3.10.110.10	GO:A0A078JCV5	UniProt:A0A078JCV5	EnsemblPlants:CDY62105	ProteinID:CDY62105
ProteinID:CDY62105.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00035963001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR44189	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EE015E	:	:

Description

BnaC05g51200DBnaC05g51200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCV5]

Coordinates

chrLK034100:+:22850..24137

Molecular Weight (calculated)

19418.0 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.424

Length

175 amino acids

Sequence
(BLAST)

001: MAAVNGYQGN TPAASKQSAP PTKTVDSQSV LKRLQSELMG LMMGGDPGIS AFPEEDNIFC WKGTITGSKD TVFEGTEYRL SLSFSNDYPF KPPKIKFHTG
101: CFHPNVDLYG NICLDILQQD KWSSAYDVRT ILLSIQSLLG EPNISSPLNT QAAQLWSNQE EYRKMVEKLY KPPSA

Best Arabidopsis Sequence Match ( AT1G50490.1 )
(BLAST)

001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA

Arabidopsis Description

UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.