Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 84.93 | 100.0 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 79.45 | 92.06 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 79.91 | 90.67 |
| Os01t0273100-01 | Rice | plastid | 73.97 | 84.82 |
| KXG32249 | Sorghum | plastid | 69.41 | 82.61 |
| Zm00001d008260_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 68.49 | 81.97 |
| OQU80782 | Sorghum | nucleus, plastid | 66.67 | 77.66 |
| CDY45063 | Canola | cytosol | 43.38 | 74.22 |
| GSMUA_Achr3P08740_001 | Banana | cytosol | 61.19 | 73.63 |
| GSMUA_Achr9P17810_001 | Banana | cytosol | 61.64 | 72.97 |
| Bra030487.1-P | Field mustard | cytosol, plastid | 57.08 | 71.84 |
| CDY29588 | Canola | cytosol, plastid | 57.08 | 71.43 |
| CDY62105 | Canola | cytosol, plastid | 57.08 | 71.43 |
| CDY42228 | Canola | plastid | 58.9 | 71.27 |
| Bra038253.1-P | Field mustard | nucleus | 58.9 | 71.27 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 57.53 | 70.79 |
| AT1G50490.1 | Thale cress | plastid | 57.99 | 70.56 |
| CDY33445 | Canola | nucleus | 57.99 | 70.17 |
| Bra035819.1-P | Field mustard | cytosol, plastid | 57.99 | 70.17 |
| Solyc11g065190.1.1 | Tomato | plastid | 57.99 | 70.17 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 56.62 | 70.06 |
| CDY37132 | Canola | cytosol, plastid | 57.53 | 69.61 |
| CDY22799 | Canola | cytosol, plastid | 57.53 | 69.61 |
| Bra018852.1-P | Field mustard | cytosol, plastid | 57.53 | 69.61 |
| KRH24100 | Soybean | cytosol, plastid | 57.08 | 69.44 |
| CDY25375 | Canola | plastid | 57.53 | 69.23 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 57.53 | 69.23 |
| AT3G20060.1 | Thale cress | plastid | 57.08 | 69.06 |
| Bra014255.1-P | Field mustard | cytosol | 47.03 | 62.8 |
| KRH29075 | Soybean | cytosol, golgi, peroxisome, plastid | 47.95 | 58.01 |
| CDY03608 | Canola | nucleus | 26.94 | 50.0 |
| Zm00001d008261_P003 | Maize | nucleus | 55.71 | 48.03 |
| TraesCS4B01G346600.2 | Wheat | cytosol | 26.48 | 36.02 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 26.48 | 34.32 |
| TraesCS1B01G214400.2 | Wheat | nucleus | 25.11 | 32.74 |
| TraesCS2B01G413400.1 | Wheat | peroxisome | 22.37 | 30.82 |
| TraesCS1B01G294400.2 | Wheat | plastid | 26.48 | 29.0 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G216000.2 | EnsemblPlantsGene:TraesCS3B01G216000 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44189 | PFAM:PF00179 | PFscan:PS50127 | ScanProsite:PS00183 |
| SEG:seg | SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 | MapMan:13.3.4.1.2 | : |
Description
No Description!
Coordinates
chr3B:-:257102328..257103093
Molecular Weight (calculated)
23397.6 Da
IEP (calculated)
5.014
GRAVY (calculated)
-0.222
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGENSESH GSGNVPAAPA PGAASASSGK QAPAAARGAD GQSVVRRLQS ELMALMMGGD PGVSAFPEGD NIFQWVGTID GSAATAYEGT SYRLALAFPS
101: DYPYKPPKVR FETPCFHPNV DNHGNICLDI LQDKWSSAYD VRTILLSIQS LLGEPNNDSP LNTQAAALWA NQEGKLPSSF ERPMLIDHQP VLGSESACFV
201: LLLVCAEFRK MVEKLYKPA
101: DYPYKPPKVR FETPCFHPNV DNHGNICLDI LQDKWSSAYD VRTILLSIQS LLGEPNNDSP LNTQAAALWA NQEGKLPSSF ERPMLIDHQP VLGSESACFV
201: LLLVCAEFRK MVEKLYKPA
001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
Arabidopsis Description
UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.