Factsheet for VIT_06s0061g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45063	Canola	cytosol	59.89	82.81
Bra030487.1-P	Field mustard	cytosol, plastid	81.36	82.76
PGSC0003DMT400080256	Potato	cytosol, plastid	83.05	82.58
CDY62105	Canola	cytosol, plastid	81.36	82.29
CDY29588	Canola	cytosol, plastid	81.36	82.29
Solyc11g065190.1.1	Tomato	plastid	83.62	81.77
AT1G50490.1	Thale cress	plastid	83.05	81.67
KRH24100	Soybean	cytosol, plastid	82.49	81.11
Bra035819.1-P	Field mustard	cytosol, plastid	82.49	80.66
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	82.49	80.22
CDY25375	Canola	plastid	82.49	80.22
CDY22799	Canola	cytosol, plastid	81.92	80.11
CDY37132	Canola	cytosol, plastid	81.92	80.11
Bra018852.1-P	Field mustard	cytosol, plastid	81.92	80.11
Bra038253.1-P	Field mustard	nucleus	81.36	79.56
CDY33445	Canola	nucleus	81.36	79.56
CDY42228	Canola	plastid	81.36	79.56
AT3G20060.1	Thale cress	plastid	80.23	78.45
GSMUA_Achr3P08740_001	Banana	cytosol	78.53	76.37
GSMUA_Achr9P17810_001	Banana	cytosol	76.84	73.51
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	69.49	67.96
TraesCS3A01G186500.1	Wheat	cytosol, plastid	70.06	66.67
Bra014255.1-P	Field mustard	cytosol	61.02	65.85
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	67.23	65.03
KXG32249	Sorghum	plastid	66.67	64.13
Os01t0273100-01	Rice	plastid	68.93	63.87
VIT_13s0019g04090.t01	Wine grape	cytosol	66.67	62.11
HORVU3Hr1G038430.3	Barley	nucleus, plastid	64.41	60.32
OQU80782	Sorghum	nucleus, plastid	63.84	60.11
TraesCS3D01G190400.2	Wheat	nucleus, plastid	64.97	59.59
CDY03608	Canola	nucleus	39.55	59.32
TraesCS3B01G216000.2	Wheat	plastid	70.06	56.62
Zm00001d008261_P003	Maize	nucleus	54.24	37.8
VIT_07s0031g00160.t01	Wine grape	nucleus	32.2	35.19
VIT_06s0004g04430.t01	Wine grape	cytosol, nucleus, plastid	31.07	32.35
VIT_13s0019g00910.t01	Wine grape	plastid	30.51	32.14
VIT_08s0007g00120.t01	Wine grape	mitochondrion	29.38	30.95
VIT_18s0001g10100.t01	Wine grape	nucleus	30.51	27.69

Protein Annotations

EntrezGene:100249922	wikigene:100249922	MapMan:13.3.4.1.2	Gene3D:3.10.110.10	UniProt:A5BHQ5	EMBL:AM459880
ProteinID:CAN74597	ProteinID:CAN74597.1	ProteinID:CBI17191	ProteinID:CBI17191.3	EMBL:FN594957	GO:GO:0000166
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0019538	GO:GO:0030071	GO:GO:0031145	GO:GO:0031625	GO:GO:0061630
InterPro:IPR000608	InterPro:IPR016135	EntrezGene:LOC100249922	wikigene:LOC100249922	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR44189	SMART:SM00212	SUPFAM:SSF54495	TIGR:TC53490	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001520F71	ArrayExpress:VIT_06s0061g00070	EnsemblPlantsGene:VIT_06s0061g00070	EnsemblPlants:VIT_06s0061g00070.t01
unigene:Vvi.14272	RefSeq:XP_002278564	RefSeq:XP_002278564.1	:	:	:

Description

No Description!

Coordinates

chr6:-:17270834..17272814

Molecular Weight (calculated)

19712.4 Da

IEP (calculated)

4.937

GRAVY (calculated)

-0.346

Length

177 amino acids

Sequence
(BLAST)

001: MTTVNNSYQD NNNNPAVAAT KQPLPPAKSV DTQSVLKRLQ SELMALMMSG DGGISAFPEE DNIFCWKGTI NGSKDTVFEG TEYKLSLSFP TDYPFKPPKV
101: KFETGCFHPN VDVYGNICLD ILQDKWSSAY DVRTILLSIQ SLLGEPNISS PLNTQAAALW SNQEEYRKMV MKLYKAV

Best Arabidopsis Sequence Match ( AT1G50490.1 )
(BLAST)

001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA

Arabidopsis Description

UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.