Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- mitochondrion 2
- cytosol 1
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060478 | Potato | cytosol, nucleus, plastid | 91.07 | 91.07 |
| Solyc04g011430.2.1 | Tomato | cytosol | 89.29 | 90.91 |
| Solyc05g054550.2.1 | Tomato | cytosol, nucleus, plastid | 91.07 | 90.0 |
| PGSC0003DMT400071311 | Potato | nucleus | 88.1 | 89.7 |
| VIT_06s0004g04430.t01 | Wine grape | cytosol, nucleus, plastid | 90.48 | 89.41 |
| PGSC0003DMT400060483 | Potato | cytosol, nucleus, plastid | 90.48 | 89.41 |
| GSMUA_Achr6P34220_001 | Banana | plastid | 89.29 | 89.29 |
| VIT_08s0007g00120.t01 | Wine grape | mitochondrion | 87.5 | 87.5 |
| Bra003210.1-P | Field mustard | nucleus | 86.9 | 87.43 |
| CDY62383 | Canola | nucleus | 86.9 | 87.43 |
| CDY53695 | Canola | nucleus | 86.9 | 87.43 |
| Zm00001d038376_P001 | Maize | extracellular | 87.5 | 86.98 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 86.9 | 86.9 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 86.31 | 86.83 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 86.31 | 86.83 |
| Solyc05g054540.2.1 | Tomato | plastid | 87.5 | 86.47 |
| Os01t0839700-01 | Rice | cytosol, nucleus, plastid | 86.9 | 86.39 |
| Bra014751.1-P | Field mustard | cytosol, nucleus, plastid | 85.71 | 86.23 |
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 86.31 | 85.8 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 86.31 | 85.8 |
| TraesCS3A01G357700.1 | Wheat | cytosol, nucleus, plastid | 86.31 | 85.8 |
| Os05t0460200-01 | Rice | cytosol, nucleus, plastid | 86.31 | 85.8 |
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 85.12 | 84.62 |
| TraesCS1A01G285200.1 | Wheat | cytosol, nucleus, plastid | 85.12 | 84.62 |
| EES03856 | Sorghum | cytosol, nucleus, plastid | 84.52 | 84.02 |
| HORVU1Hr1G072200.2 | Barley | cytosol | 84.52 | 84.02 |
| CDY40214 | Canola | nucleus | 82.74 | 83.23 |
| Bra007157.1-P | Field mustard | nucleus | 82.74 | 83.23 |
| Zm00001d042929_P001 | Maize | cytosol, nucleus, plastid | 83.33 | 82.84 |
| Zm00001d012421_P003 | Maize | cytosol, nucleus, plastid | 83.33 | 82.84 |
| CDY41239 | Canola | nucleus | 82.14 | 82.63 |
| KXG22164 | Sorghum | cytosol, nucleus, plastid | 77.98 | 76.16 |
| GSMUA_Achr5P08370_001 | Banana | cytosol | 58.93 | 72.79 |
| TraesCS1B01G294400.2 | Wheat | plastid | 85.12 | 71.5 |
| AT3G55380.2 | Thale cress | nucleus | 83.33 | 69.65 |
| Zm00001d010534_P001 | Maize | cytosol | 85.71 | 60.76 |
| GSMUA_Achr5P08330_001 | Banana | extracellular, golgi, vacuole | 33.33 | 58.95 |
| HORVU3Hr1G086540.2 | Barley | endoplasmic reticulum, golgi, plastid | 86.31 | 57.31 |
| Zm00001d040631_P001 | Maize | cytosol | 58.33 | 43.17 |
| VIT_07s0031g00160.t01 | Wine grape | nucleus | 30.95 | 32.1 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 32.14 | 30.51 |
| VIT_13s0019g04090.t01 | Wine grape | cytosol | 32.74 | 28.95 |
| VIT_18s0001g10100.t01 | Wine grape | nucleus | 28.57 | 24.62 |
| Zm00001d008383_P001 | Maize | plastid | 27.38 | 20.0 |
| Zm00001d009034_P002 | Maize | nucleus | 43.45 | 18.86 |
| Zm00001d029705_P032 | Maize | plasma membrane | 30.36 | 9.38 |
| Zm00001d005779_P153 | Maize | plasma membrane | 20.24 | 5.67 |
Protein Annotations
| EntrezGene:100242812 | wikigene:100242812 | MapMan:19.2.2.1.6.1.1 | MapMan:19.2.4.1.2 | Gene3D:3.10.110.10 | ProteinID:CBI31693 |
| ProteinID:CBI31693.3 | UniProt:D7TLV6 | EMBL:FN595998 | GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 |
| GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | EntrezGene:LOC100242812 | wikigene:LOC100242812 | PFAM:PF00179 |
| ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24067 | PANTHER:PTHR24067:SF237 | SMART:SM00212 | SUPFAM:SSF54495 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00015C9B5F | ArrayExpress:VIT_13s0019g00910 | EnsemblPlantsGene:VIT_13s0019g00910 |
| EnsemblPlants:VIT_13s0019g00910.t01 | unigene:Vvi.15188 | RefSeq:XP_002283823 | RefSeq:XP_002283823.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr13:-:2698805..2704703
Molecular Weight (calculated)
18749.1 Da
IEP (calculated)
4.824
GRAVY (calculated)
-0.377
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MASASQASLL LQKQLKDLCK HPVDGFSAGL VDESNIFEWS VTIIGPPDTL YDGGFFNAVM TFPPDYPNSP PTVRFTSEIW HPNVYPDGKV CISILHPPGD
101: DPNGYELATE RWSPVHTVES IVLSIISMLS SPNDESPANV EAAKEWRDKR DEFKKKVGRC VRRSQEML
101: DPNGYELATE RWSPVHTVES IVLSIISMLS SPNDESPANV EAAKEWRDKR DEFKKKVGRC VRRSQEML
001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
Arabidopsis Description
UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.