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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
  • plastid 3
  • cytosol 1
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400060478 Potato cytosol, nucleus, plastid 97.65 98.81
Solyc05g054540.2.1 Tomato plastid 94.71 94.71
Solyc04g011430.2.1 Tomato cytosol 89.41 92.12
VIT_13s0019g00910.t01 Wine grape plastid 90.0 91.07
GSMUA_Achr6P34220_001 Banana plastid 87.65 88.69
CDX76101 Canola cytosol, nucleus, plastid 87.06 88.62
CDY02931 Canola cytosol, nucleus, plastid 87.06 88.62
Bra014751.1-P Field mustard cytosol, nucleus, plastid 86.47 88.02
Bra003210.1-P Field mustard nucleus 85.88 87.43
CDY62383 Canola nucleus 85.88 87.43
CDY53695 Canola nucleus 85.88 87.43
Os01t0839700-01 Rice cytosol, nucleus, plastid 85.29 85.8
Solyc09g009720.1.1 Tomato nucleus 84.12 85.63
TraesCS3D01G351600.1 Wheat cytosol, nucleus, plastid 84.71 85.21
TraesCS3B01G390400.1 Wheat cytosol, nucleus, plastid 84.71 85.21
TraesCS3A01G357700.1 Wheat cytosol, nucleus, plastid 84.71 85.21
GSMUA_Achr11P... Banana cytosol, nucleus, plastid 84.12 85.12
Zm00001d038376_P001 Maize extracellular 84.12 84.62
Bra007157.1-P Field mustard nucleus 82.94 84.43
CDY40214 Canola nucleus 82.94 84.43
EES03856 Sorghum cytosol, nucleus, plastid 83.53 84.02
CDY41239 Canola nucleus 82.35 83.83
Zm00001d012421_P003 Maize cytosol, nucleus, plastid 82.94 83.43
Os05t0460200-01 Rice cytosol, nucleus, plastid 82.94 83.43
Zm00001d042929_P001 Maize cytosol, nucleus, plastid 82.35 82.84
TraesCS1A01G285200.1 Wheat cytosol, nucleus, plastid 81.76 82.25
TraesCS1D01G284200.1 Wheat cytosol, nucleus, plastid 81.76 82.25
HORVU1Hr1G072200.2 Barley cytosol 81.18 81.66
KXG22164 Sorghum cytosol, nucleus, plastid 77.06 76.16
GSMUA_Achr5P08370_001 Banana cytosol 60.59 75.74
AT3G55380.2 Thale cress nucleus 85.29 72.14
TraesCS1B01G294400.2 Wheat plastid 81.76 69.5
Zm00001d010534_P001 Maize cytosol 84.12 60.34
HORVU3Hr1G086540.2 Barley endoplasmic reticulum, golgi, plastid 84.71 56.92
GSMUA_Achr5P08330_001 Banana extracellular, golgi, vacuole 31.18 55.79
Zm00001d040631_P001 Maize cytosol 58.82 44.05
Solyc03g112720.2.1 Tomato nucleus 27.65 31.54
Solyc02g093110.2.1 Tomato nucleus 29.41 31.25
Solyc12g088680.1.1 Tomato cytosol 28.82 30.62
Solyc11g065190.1.1 Tomato plastid 32.35 30.39
Solyc03g044260.2.1 Tomato nucleus 28.24 30.0
Solyc04g078620.2.1 Tomato nucleus 28.24 30.0
Solyc07g021660.1.1 Tomato extracellular 20.59 25.36
Solyc07g021670.1.1 Tomato cytosol, mitochondrion 8.24 23.33
Zm00001d008383_P001 Maize plastid 27.06 20.0
Zm00001d009034_P002 Maize nucleus 44.12 19.38
Zm00001d029705_P032 Maize plasma membrane 29.41 9.19
Zm00001d005779_P153 Maize plasma membrane 20.59 5.83
Protein Annotations
MapMan:19.2.2.1.6.1.1MapMan:19.2.4.1.2Gene3D:3.10.110.10ncoils:CoilGO:GO:0000166GO:GO:0000209
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006464GO:GO:0006511GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016740GO:GO:0019538GO:GO:0031625
GO:GO:0061630InterPro:IPR000608InterPro:IPR016135UniProt:K4C2D3EMBL:KY246901PFAM:PF00179
ScanProsite:PS00183PFscan:PS50127PANTHER:PTHR24067PANTHER:PTHR24067:SF237SMART:SM00212SUPFAM:SSF54495
EnsemblPlantsGene:Solyc05g054550.2EnsemblPlants:Solyc05g054550.2.1InterPro:UBQ-conjugat_E2InterPro:UBQ-conjugating_ASInterPro:UBQ-conjugating_enzyme/RWDUniParc:UPI0002766AED
SEG:seg:::::
Description
UBC7 [Source:UniProtKB/TrEMBL;Acc:K4C2D3]
Coordinates
chr5:+:64446771..64450717
Molecular Weight (calculated)
19012.4 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.436
Length
170 amino acids
Sequence
(BLAST)
001: MASTSPSQAS LLLQKQLKDL CKKPVDGFSA GLVDESNLFE WSVTIIGPPE TLYDGGFFNA IMSFPQNYPN SPPTVKFTSE IWHPNVYSDG KVCISILHPP
101: GDDPNGYELA SERWSPVHTV ESIMLSIISM LSSPNDESPA NVEAAKEWRD NRDEFKKKVS RCVRRSQEMM
Best Arabidopsis Sequence Match ( AT5G59300.1 )
(BLAST)
001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
Arabidopsis Description
UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.