Factsheet for Solyc02g093110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044260.2.1	Tomato	nucleus	91.25	91.25
EER95612	Sorghum	nucleus	90.62	90.62
GSMUA_Achr1P03640_001	Banana	nucleus	90.62	90.62
Os03t0123100-01	Rice	cytosol	90.0	90.0
GSMUA_AchrUn_...	Banana	nucleus	90.0	90.0
Zm00001d048473_P003	Maize	nucleus	89.38	89.38
Zm00001d027427_P001	Maize	nucleus	89.38	89.38
GSMUA_Achr3P05370_001	Banana	cytosol	88.75	88.75
Os10t0536000-01	Rice	cytosol	88.75	88.75
TraesCS1D01G203200.1	Wheat	nucleus	88.75	88.2
TraesCS1A01G199500.1	Wheat	nucleus	88.75	88.2
EER92016	Sorghum	nucleus	88.12	88.12
Zm00001d047354_P001	Maize	nucleus	88.12	88.12
VIT_07s0031g00160.t01	Wine grape	nucleus	88.75	87.65
TraesCS5A01G515400.1	Wheat	cytosol	88.12	87.58
TraesCS4D01G341600.2	Wheat	cytosol	88.12	87.58
TraesCS4B01G346600.2	Wheat	cytosol	88.12	87.58
TraesCS1B01G214400.2	Wheat	nucleus	88.75	84.52
GSMUA_Achr9P14150_001	Banana	nucleus	84.38	84.38
Solyc04g078620.2.1	Tomato	nucleus	84.38	84.38
Zm00001d029740_P002	Maize	nucleus	83.75	83.75
Solyc12g088680.1.1	Tomato	cytosol	82.5	82.5
CDX93982	Canola	cytosol	81.25	81.25
CDY66302	Canola	cytosol	80.62	80.62
Bra014406.1-P	Field mustard	cytosol	80.62	80.62
HORVU1Hr1G051610.3	Barley	nucleus	89.38	80.34
Solyc03g112720.2.1	Tomato	nucleus	68.75	73.83
HORVU4Hr1G084760.5	Barley	plastid	87.5	72.54
Solyc07g021670.1.1	Tomato	cytosol, mitochondrion	25.62	68.33
Solyc07g021660.1.1	Tomato	extracellular	46.25	53.62
Solyc11g065190.1.1	Tomato	plastid	37.5	33.15
Solyc04g011430.2.1	Tomato	cytosol	32.5	31.52
Solyc09g009720.1.1	Tomato	nucleus	32.5	31.14
Solyc05g054540.2.1	Tomato	plastid	32.5	30.59
Solyc05g054550.2.1	Tomato	cytosol, nucleus, plastid	31.25	29.41

Protein Annotations

MapMan:19.2.2.2.3	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016925
GO:GO:0019538	GO:GO:0019789	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4BDA7	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	SMART:SM00212	SUPFAM:SSF54495
EnsemblPlantsGene:Solyc02g093110.2	EnsemblPlants:Solyc02g093110.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000276830F
InterPro:Ubc9	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:54027414..54031396

Molecular Weight (calculated)

18067.7 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.510

Length

160 amino acids

Sequence
(BLAST)

001: MSGGIARGRL AEERKAWRKN HPHGFVAKPE TLPDGSVNLM IWHCTIPGKA ETDWEGGCYP LTIHFSEDYP SKPPKCKFPP GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTEGYHMFIQ DVLEYRKRVR LQSKQYPPLV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.