CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97813
OQU78332
OQU87495

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	EER97813	AT2G39760.1	21798944
AT3G57870.1	OQU78332	AT5G56630.1	21798944
AT3G57870.1	OQU87495	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048473_P003	Maize	nucleus	98.75	98.75
Zm00001d027427_P001	Maize	nucleus	98.75	98.75
Os03t0123100-01	Rice	cytosol	98.12	98.12
GSMUA_Achr1P03640_001	Banana	nucleus	96.88	96.88
GSMUA_AchrUn_...	Banana	nucleus	95.62	95.62
EER92016	Sorghum	nucleus	94.38	94.38
KRH04554	Soybean	nucleus	93.75	93.75
KRH57897	Soybean	nucleus	93.75	93.75
KRH28435	Soybean	cytosol	93.12	93.71
KRH77039	Soybean	cytosol	92.5	93.08
VIT_07s0031g00160.t01	Wine grape	nucleus	93.12	91.98
Solyc02g093110.2.1	Tomato	nucleus	90.62	90.62
AT3G57870.1	Thale cress	cytosol	90.0	90.0
Solyc03g044260.2.1	Tomato	nucleus	90.0	90.0
CDX93982	Canola	cytosol	85.0	85.0
Bra014406.1-P	Field mustard	cytosol	84.38	84.38
CDY66302	Canola	cytosol	84.38	84.38
PGSC0003DMT400016581	Potato	nucleus	83.75	79.76
PGSC0003DMT400025497	Potato	extracellular	65.0	75.36
EES12705	Sorghum	mitochondrion	72.5	72.96
EES12706	Sorghum	mitochondrion	71.25	71.7
VIT_18s0001g10100.t01	Wine grape	nucleus	83.75	68.72
Solyc07g021670.1.1	Tomato	cytosol, mitochondrion	25.0	66.67
OQU82197	Sorghum	cytosol	65.62	62.5
PGSC0003DMT400014261	Potato	nucleus	33.12	57.61
EES03856	Sorghum	cytosol, nucleus, plastid	33.12	31.36
KXG32249	Sorghum	plastid	35.0	30.43
OQU80782	Sorghum	nucleus, plastid	33.75	28.72
KXG22164	Sorghum	cytosol, nucleus, plastid	30.62	28.49

Protein Annotations

MapMan:19.2.2.2.3	Gene3D:3.10.110.10	EntrezGene:8085719	UniProt:C5X0V8	EnsemblPlants:EER95612	ProteinID:EER95612
ProteinID:EER95612.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016925	GO:GO:0019538
GO:GO:0019789	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	MetaCyc:PWY-7511	SMART:SM00212	EnsemblPlantsGene:SORBI_3001G526600	SUPFAM:SSF54495
unigene:Sbi.12950	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001A831E1	InterPro:Ubc9
RefSeq:XP_002468614.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:79055312..79057928

Molecular Weight (calculated)

18053.6 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.552

Length

160 amino acids

Sequence
(BLAST)

001: MSGGIARGRL AEERKAWRKN HPHGFVAKPE TLPDGTVNLM IWHCTIPGKQ GTDWEGGYFP LTLHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTDGYHLFIQ DPTEYKRRVR LQAKQYPALV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.