CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002570_P001	Maize	mitochondrion, nucleus	91.82	91.82
EES12705	Sorghum	mitochondrion	79.25	79.25
EER95612	Sorghum	nucleus	71.7	71.25
EER92016	Sorghum	nucleus	69.81	69.38
TraesCS2B01G413400.1	Wheat	peroxisome	69.18	69.18
OQU82197	Sorghum	cytosol	71.07	67.26
PGSC0003DMT400046775	Potato	nucleus	66.67	65.84
Solyc03g112720.2.1	Tomato	nucleus	61.64	65.77
Os04t0580400-01	Rice	cytosol	49.69	56.83
TraesCS2A01G395300.2	Wheat	endoplasmic reticulum, extracellular	61.01	55.75
TraesCS2D01G393100.2	Wheat	endoplasmic reticulum	61.01	55.75
HORVU2Hr1G094030.8	Barley	nucleus, plastid	71.7	52.78
CDX73361	Canola	extracellular	25.16	43.48
EES03856	Sorghum	cytosol, nucleus, plastid	32.7	30.77
KXG32249	Sorghum	plastid	33.96	29.35
KXG22164	Sorghum	cytosol, nucleus, plastid	31.45	29.07
OQU80782	Sorghum	nucleus, plastid	33.33	28.19

Protein Annotations

MapMan:19.2.2.2.3	Gene3D:3.10.110.10	EntrezGene:8057678	UniProt:C5YEH6	EnsemblPlants:EES12706	ProteinID:EES12706
ProteinID:EES12706.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016925	GO:GO:0019538	GO:GO:0019789	InterPro:IPR000608	InterPro:IPR016135
PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR43927	PANTHER:PTHR43927:SF2	SMART:SM00212	EnsemblPlantsGene:SORBI_3006G189300
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001A87767	InterPro:Ubc9	RefSeq:XP_002448378.1

Description

hypothetical protein

Coordinates

chr6:-:54371771..54373396

Molecular Weight (calculated)

17843.4 Da

IEP (calculated)

9.235

GRAVY (calculated)

-0.386

Length

159 amino acids

Sequence
(BLAST)

001: MASGGVARAR LAEERKSWRR SHPHGFVAKP ATLPDGSVNL MLWNCIVPGK KDTDWEGGHF PLTLHFTEDY PSRPPDCKFP AGFFHVNVYN TGSVCLSILA
101: DAWKPSITVR QILIGIQDLL DNPNPASPAQ NLCYVLFTQN TPEYKNRVRQ QAKRYPPLV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.