Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 4
- extracellular 4
- golgi 3
- plasma membrane 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G393100.2 | Wheat | endoplasmic reticulum | 93.68 | 93.68 |
| TraesCS2B01G413400.1 | Wheat | peroxisome | 77.01 | 84.28 |
| EES12705 | Sorghum | mitochondrion | 58.05 | 63.52 |
| Zm00001d002570_P001 | Maize | mitochondrion, nucleus | 56.9 | 62.26 |
| Os04t0580400-01 | Rice | cytosol | 48.85 | 61.15 |
| HORVU2Hr1G094030.8 | Barley | nucleus, plastid | 75.86 | 61.11 |
| EES12706 | Sorghum | mitochondrion | 55.75 | 61.01 |
| Solyc03g112720.2.1 | Tomato | nucleus | 51.72 | 60.4 |
| PGSC0003DMT400046775 | Potato | nucleus | 53.45 | 57.76 |
| OQU82197 | Sorghum | cytosol | 52.87 | 54.76 |
| TraesCS1A01G199500.1 | Wheat | nucleus | 50.57 | 54.66 |
| TraesCS5A01G515400.1 | Wheat | cytosol | 50.57 | 54.66 |
| CDX73361 | Canola | extracellular | 21.84 | 41.3 |
| Zm00001d002572_P002 | Maize | cytosol, golgi, mitochondrion, nucleus | 58.62 | 31.48 |
| TraesCS1A01G285200.1 | Wheat | cytosol, nucleus, plastid | 29.89 | 30.77 |
| TraesCS3A01G357700.1 | Wheat | cytosol, nucleus, plastid | 28.74 | 29.59 |
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 25.86 | 24.19 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF2 | SMART:SM00212 |
| SUPFAM:SSF54495 | SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS2A01G395300 | EnsemblPlants:TraesCS2A01G395300.2 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD |
| InterPro:Ubc9 | TIGR:cd00195 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:646865291..646867555
Molecular Weight (calculated)
19530.4 Da
IEP (calculated)
8.096
GRAVY (calculated)
-0.275
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAPAPRPSY LLSLPNFLCF FLRIYASGNG DTGASWLFQG FVAKPETLPD GSVNLMLWRC VIPGKPGTDW EGGYYPLTMQ FDDNYPTTAP SCRFPAGFFH
101: INVYDSGAVC LSILGGAWKP SITVKQVLVG IQELLDDPNP DSSAQHRCYE LYKKNMPEYK NKVREQAKRY PSRM
101: INVYDSGAVC LSILGGAWKP SITVKQVLVG IQELLDDPNP DSSAQHRCYE LYKKNMPEYK NKVREQAKRY PSRM
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.