Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G395300.2 | Wheat | endoplasmic reticulum, extracellular | 84.28 | 77.01 |
| TraesCS2D01G393100.2 | Wheat | endoplasmic reticulum | 82.39 | 75.29 |
| Solyc03g112720.2.1 | Tomato | nucleus | 68.55 | 73.15 |
| EES12705 | Sorghum | mitochondrion | 71.7 | 71.7 |
| PGSC0003DMT400046775 | Potato | nucleus | 71.7 | 70.81 |
| Zm00001d002570_P001 | Maize | mitochondrion, nucleus | 69.81 | 69.81 |
| EES12706 | Sorghum | mitochondrion | 69.18 | 69.18 |
| HORVU2Hr1G094030.8 | Barley | nucleus, plastid | 93.71 | 68.98 |
| TraesCS4B01G346600.2 | Wheat | cytosol | 67.92 | 67.08 |
| OQU82197 | Sorghum | cytosol | 69.18 | 65.48 |
| Os04t0580400-01 | Rice | cytosol | 55.35 | 63.31 |
| TraesCS1B01G214400.2 | Wheat | nucleus | 66.67 | 63.1 |
| CDX73361 | Canola | extracellular | 23.9 | 41.3 |
| Zm00001d002572_P002 | Maize | cytosol, golgi, mitochondrion, nucleus | 69.18 | 33.95 |
| TraesCS3B01G390400.1 | Wheat | cytosol, nucleus, plastid | 33.96 | 31.95 |
| TraesCS1B01G294400.2 | Wheat | plastid | 33.96 | 27.0 |
| TraesCS3B01G216000.2 | Wheat | plastid | 30.82 | 22.37 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF2 | SMART:SM00212 |
| SUPFAM:SSF54495 | EnsemblPlantsGene:TraesCS2B01G413400 | EnsemblPlants:TraesCS2B01G413400.1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | InterPro:Ubc9 |
| TIGR:cd00195 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:589089373..589091764
Molecular Weight (calculated)
17977.5 Da
IEP (calculated)
9.132
GRAVY (calculated)
-0.596
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGGIARGR LAEERKSWRK NHPHGFVAKP ETLPDGSVNL MVWRCIIPGK PGTDWEGGYY PLTMQFDDNY PTTAPSCRFP AGFFHINVYD SGAVCLSILG
101: GAWKPSITVK QVLVGIQELL DDPNPNSSAQ HRCYELYKKD MPEYRNKVRE QAKRYPSRM
101: GAWKPSITVK QVLVGIQELL DDPNPNSSAQ HRCYELYKKD MPEYRNKVRE QAKRYPSRM
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.