Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046775 | Potato | nucleus | 89.26 | 82.61 |
| Solyc04g078620.2.1 | Tomato | nucleus | 75.84 | 70.62 |
| Solyc12g088680.1.1 | Tomato | cytosol | 73.83 | 68.75 |
| Solyc02g093110.2.1 | Tomato | nucleus | 73.83 | 68.75 |
| TraesCS2B01G413400.1 | Wheat | peroxisome | 73.15 | 68.55 |
| Solyc03g044260.2.1 | Tomato | nucleus | 71.81 | 66.88 |
| Solyc07g021670.1.1 | Tomato | cytosol, mitochondrion | 26.17 | 65.0 |
| EES12705 | Sorghum | mitochondrion | 67.11 | 62.89 |
| EES12706 | Sorghum | mitochondrion | 65.77 | 61.64 |
| OQU82197 | Sorghum | cytosol | 67.79 | 60.12 |
| Zm00001d002570_P001 | Maize | mitochondrion, nucleus | 63.09 | 59.12 |
| Os04t0580400-01 | Rice | cytosol | 49.66 | 53.24 |
| TraesCS2A01G395300.2 | Wheat | endoplasmic reticulum, extracellular | 60.4 | 51.72 |
| TraesCS2D01G393100.2 | Wheat | endoplasmic reticulum | 58.39 | 50.0 |
| HORVU2Hr1G094030.8 | Barley | nucleus, plastid | 71.14 | 49.07 |
| Solyc07g021660.1.1 | Tomato | extracellular | 40.94 | 44.2 |
| Solyc11g065190.1.1 | Tomato | plastid | 36.24 | 29.83 |
| Zm00001d002572_P002 | Maize | cytosol, golgi, mitochondrion, nucleus | 63.76 | 29.32 |
| Solyc04g011430.2.1 | Tomato | cytosol | 32.21 | 29.09 |
| Solyc05g054540.2.1 | Tomato | plastid | 32.89 | 28.82 |
| Solyc09g009720.1.1 | Tomato | nucleus | 32.21 | 28.74 |
| Solyc05g054550.2.1 | Tomato | cytosol, nucleus, plastid | 31.54 | 27.65 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016925 | GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 |
| InterPro:IPR016135 | UniProt:K4BKC5 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF4 |
| SMART:SM00212 | SUPFAM:SSF54495 | EnsemblPlantsGene:Solyc03g112720.2 | EnsemblPlants:Solyc03g112720.2.1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI0002767696 | InterPro:Ubc9 | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:63067089..63069943
Molecular Weight (calculated)
16622.9 Da
IEP (calculated)
8.921
GRAVY (calculated)
-0.494
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGIARGRL TEERKAWRKN HPHGFVARPE TGPDGSANLM LWRCIIPGKP GTDWEGGHYP LTMHFSEDYP SQPPKCKFPR GFFHINVYPS GDVCLSILNT
101: GLGWSPAITV KQILVGIQEL LDEPNPSSSA QSECYKLYVK KIKLSTRNE
101: GLGWSPAITV KQILVGIQEL LDEPNPSSSA QSECYKLYVK KIKLSTRNE
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.