Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G413400.1 | Wheat | peroxisome | 63.31 | 55.35 |
| TraesCS2D01G393100.2 | Wheat | endoplasmic reticulum | 62.59 | 50.0 |
| EES12705 | Sorghum | mitochondrion | 56.83 | 49.69 |
| EES12706 | Sorghum | mitochondrion | 56.83 | 49.69 |
| Zm00001d002570_P001 | Maize | mitochondrion, nucleus | 56.83 | 49.69 |
| Solyc03g112720.2.1 | Tomato | nucleus | 53.24 | 49.66 |
| TraesCS2A01G395300.2 | Wheat | endoplasmic reticulum, extracellular | 61.15 | 48.85 |
| OQU82197 | Sorghum | cytosol | 58.27 | 48.21 |
| PGSC0003DMT400046775 | Potato | nucleus | 54.68 | 47.2 |
| Os03t0123100-01 | Rice | cytosol | 52.52 | 45.62 |
| Os10t0536000-01 | Rice | cytosol | 51.08 | 44.38 |
| CDX73361 | Canola | extracellular | 28.78 | 43.48 |
| HORVU2Hr1G094030.8 | Barley | nucleus, plastid | 63.31 | 40.74 |
| Os05t0460200-01 | Rice | cytosol, nucleus, plastid | 30.94 | 25.44 |
| Os01t0839700-01 | Rice | cytosol, nucleus, plastid | 29.5 | 24.26 |
| Zm00001d002572_P002 | Maize | cytosol, golgi, mitochondrion, nucleus | 56.12 | 24.07 |
| Os01t0273100-01 | Rice | plastid | 25.18 | 18.32 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | ProteinID:BAF15561.1 | ProteinID:BAS90643.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016925 | GO:GO:0019538 |
| GO:GO:0019789 | InterPro:IPR000608 | InterPro:IPR016135 | EnsemblPlantsGene:Os04g0580400 | EnsemblPlants:Os04t0580400-01 | PFAM:PF00179 |
| PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF2 | UniProt:Q0JAS6 | SMART:SM00212 | SUPFAM:SSF54495 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0000DD9224 | InterPro:Ubc9 | : | : |
Description
UBIQUITIN-CONJUGATING ENZYME 3Similar to Ubiquitin-conjugating enzyme E2 I (EC 6.3.2.19) (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO- 1 conjugating enzyme) (Ubiquitin carrier protein 9) (p18). (Os04t0580400-01)
Coordinates
chr4:-:29289244..29291788
Molecular Weight (calculated)
15720.7 Da
IEP (calculated)
6.492
GRAVY (calculated)
-0.137
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: DGSVNLMVWR CIIPGKEGTD WEGGYFPLTM QFTEDYPTNA PSCKFPSGFF HINVYDSGAV CLSILSTAWK PSITVRQILI GIQELFDDPN PNSAAQNISY
101: ELYRTWRSTG NAFVSRLRSI LQLCSRAMPA GFWQLKHFD
101: ELYRTWRSTG NAFVSRLRSI LQLCSRAMPA GFWQLKHFD
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.