Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 5
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G395300.2 | Wheat | endoplasmic reticulum, extracellular | 93.68 | 93.68 |
| TraesCS2B01G413400.1 | Wheat | peroxisome | 75.29 | 82.39 |
| EES12705 | Sorghum | mitochondrion | 58.05 | 63.52 |
| Zm00001d002570_P001 | Maize | mitochondrion, nucleus | 57.47 | 62.89 |
| Os04t0580400-01 | Rice | cytosol | 50.0 | 62.59 |
| HORVU2Hr1G094030.8 | Barley | nucleus, plastid | 75.86 | 61.11 |
| EES12706 | Sorghum | mitochondrion | 55.75 | 61.01 |
| Solyc03g112720.2.1 | Tomato | nucleus | 50.0 | 58.39 |
| OQU82197 | Sorghum | cytosol | 54.6 | 56.55 |
| PGSC0003DMT400046775 | Potato | nucleus | 51.15 | 55.28 |
| TraesCS4D01G341600.2 | Wheat | cytosol | 51.15 | 55.28 |
| TraesCS1D01G203200.1 | Wheat | nucleus | 49.43 | 53.42 |
| CDX73361 | Canola | extracellular | 21.84 | 41.3 |
| Zm00001d002572_P002 | Maize | cytosol, golgi, mitochondrion, nucleus | 58.62 | 31.48 |
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 28.74 | 29.59 |
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 27.59 | 28.4 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 24.14 | 21.76 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF2 | SMART:SM00212 |
| SUPFAM:SSF54495 | SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS2D01G393100 | EnsemblPlants:TraesCS2D01G393100.2 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD |
| InterPro:Ubc9 | TIGR:cd00195 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:501668513..501670811
Molecular Weight (calculated)
19556.5 Da
IEP (calculated)
7.704
GRAVY (calculated)
-0.205
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAPAPRPSY LLSLPNFLCF FLWIYASGNG DTGASCLFQG FVAKPETLPD GSVNLMVWRC VIPGKPGTDW EGGYFPLTLQ FDDNYPTTAP SCRFPAGFFH
101: INVYDSGVVC LSILGDAWKP SITVKQVLVG IQELLDDPNP NSAAQHRCYE LYKKNMPEYR NKVREQTKRY PSRM
101: INVYDSGVVC LSILGDAWKP SITVKQVLVG IQELLDDPNP NSAAQHRCYE LYKKNMPEYR NKVREQTKRY PSRM
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.