Factsheet for TraesCS3D01G190400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G038430.3	Barley	nucleus, plastid	95.34	97.35
TraesCS3A01G186500.1	Wheat	cytosol, plastid	90.16	93.55
TraesCS3B01G216000.2	Wheat	plastid	90.67	79.91
Os01t0273100-01	Rice	plastid	78.76	79.58
KXG32249	Sorghum	plastid	72.54	76.09
Zm00001d008260_P001	Maize	cytosol, mitochondrion, nucleus, plastid	72.02	75.96
OQU80782	Sorghum	nucleus, plastid	69.43	71.28
CDY45063	Canola	cytosol	47.15	71.09
GSMUA_Achr9P17810_001	Banana	cytosol	65.28	68.11
GSMUA_Achr3P08740_001	Banana	cytosol	63.21	67.03
Bra030487.1-P	Field mustard	cytosol, plastid	59.59	66.09
CDY42228	Canola	plastid	61.66	65.75
Bra038253.1-P	Field mustard	nucleus	61.66	65.75
CDY29588	Canola	cytosol, plastid	59.59	65.71
CDY62105	Canola	cytosol, plastid	59.59	65.71
PGSC0003DMT400080256	Potato	cytosol, plastid	60.1	65.17
AT1G50490.1	Thale cress	plastid	60.62	65.0
VIT_06s0061g00070.t01	Wine grape	cytosol	59.59	64.97
CDY33445	Canola	nucleus	60.62	64.64
Bra035819.1-P	Field mustard	cytosol, plastid	60.62	64.64
Solyc11g065190.1.1	Tomato	plastid	60.62	64.64
KRH24100	Soybean	cytosol, plastid	60.1	64.44
CDY37132	Canola	cytosol, plastid	60.1	64.09
CDY22799	Canola	cytosol, plastid	60.1	64.09
Bra018852.1-P	Field mustard	cytosol, plastid	60.1	64.09
CDY25375	Canola	plastid	60.1	63.74
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	60.1	63.74
AT3G20060.1	Thale cress	plastid	59.59	63.54
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	54.4	58.01
Bra014255.1-P	Field mustard	cytosol	48.19	56.71
Zm00001d008261_P003	Maize	nucleus	63.21	48.03
CDY03608	Canola	nucleus	27.98	45.76
TraesCS4D01G341600.2	Wheat	cytosol	28.5	34.16
TraesCS1D01G203200.1	Wheat	nucleus	27.46	32.92
TraesCS1D01G284200.1	Wheat	cytosol, nucleus, plastid	27.46	31.36
TraesCS3D01G351600.1	Wheat	cytosol, nucleus, plastid	27.46	31.36
TraesCS2D01G393100.2	Wheat	endoplasmic reticulum	21.76	24.14

Protein Annotations

EnsemblPlants:TraesCS3D01G190400.2	EnsemblPlantsGene:TraesCS3D01G190400	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR44189	PFAM:PF00179	PFscan:PS50127	ScanProsite:PS00183
SEG:seg	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:13.3.4.1.2	:

Description

No Description!

Coordinates

chr3D:-:178657833..178658513

Molecular Weight (calculated)

20454.8 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.323

Length

193 amino acids

Sequence
(BLAST)

001: MARGENSESH GSGNVPAAPA PGAASASSGK QAPAAARGAD GQSVVRRLQS ELMALMMGGD PGVSAFPEGD NIFQWVGTID GSAATAYEGT SYRLALAFPS
101: DYPYKPPKVR FETPCFHPNV DNHGNICLDI LQDKWSSAYD VRTILLSIQS LLGEPNNDSP LNTQAAALWA NQEGKLPSSS ERPVVIRSTC SWF

Best Arabidopsis Sequence Match ( AT3G20060.1 )
(BLAST)

001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A

Arabidopsis Description

UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.