Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45063 | Canola | cytosol | 67.8 | 62.5 |
| Bra014255.1-P | Field mustard | cytosol | 72.88 | 52.44 |
| CDY29588 | Canola | cytosol, plastid | 65.25 | 44.0 |
| CDY62105 | Canola | cytosol, plastid | 65.25 | 44.0 |
| CDY37132 | Canola | cytosol, plastid | 66.95 | 43.65 |
| CDY22799 | Canola | cytosol, plastid | 66.95 | 43.65 |
| AT1G50490.1 | Thale cress | plastid | 63.56 | 41.67 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 62.71 | 40.66 |
| CDY25375 | Canola | plastid | 62.71 | 40.66 |
| CDY42228 | Canola | plastid | 61.86 | 40.33 |
| CDY33445 | Canola | nucleus | 61.02 | 39.78 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 59.32 | 39.55 |
| KRH24100 | Soybean | cytosol, plastid | 59.32 | 38.89 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 58.47 | 38.76 |
| Solyc11g065190.1.1 | Tomato | plastid | 58.47 | 38.12 |
| GSMUA_Achr3P08740_001 | Banana | cytosol | 52.54 | 34.07 |
| GSMUA_Achr9P17810_001 | Banana | cytosol | 50.0 | 31.89 |
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 50.0 | 31.72 |
| KXG32249 | Sorghum | plastid | 47.46 | 30.43 |
| Os01t0273100-01 | Rice | plastid | 49.15 | 30.37 |
| Zm00001d008260_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 46.61 | 30.05 |
| OQU80782 | Sorghum | nucleus, plastid | 45.76 | 28.72 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 45.76 | 28.57 |
| KRH29075 | Soybean | cytosol, golgi, peroxisome, plastid | 43.22 | 28.18 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 45.76 | 27.98 |
| TraesCS3B01G216000.2 | Wheat | plastid | 50.0 | 26.94 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 29.66 | 20.96 |
| CDY53695 | Canola | nucleus | 29.66 | 20.96 |
| CDY62383 | Canola | nucleus | 29.66 | 20.96 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 29.66 | 20.96 |
| CDX71988 | Canola | nucleus | 27.97 | 20.62 |
| CDY70581 | Canola | cytosol | 27.97 | 20.62 |
| CDY66302 | Canola | cytosol | 27.97 | 20.62 |
| CDY47661 | Canola | cytosol | 27.97 | 20.62 |
| CDX98253 | Canola | cytosol | 27.97 | 20.62 |
| CDX93982 | Canola | cytosol | 27.97 | 20.62 |
| CDX88967 | Canola | cytosol | 27.97 | 20.62 |
| CDX67711 | Canola | cytosol | 27.97 | 20.62 |
| CDX73361 | Canola | extracellular | 15.25 | 19.57 |
| CDY33025 | Canola | cytosol | 26.27 | 18.79 |
| CDY41239 | Canola | nucleus | 25.42 | 17.96 |
| CDY40214 | Canola | nucleus | 24.58 | 17.37 |
| CDY32651 | Canola | nucleus | 24.58 | 17.06 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 24.58 | 17.06 |
| CDX80292 | Canola | cytosol | 25.42 | 16.76 |
| Zm00001d008261_P003 | Maize | nucleus | 33.9 | 15.75 |
Protein Annotations
| EnsemblPlants:CDY03608 | EnsemblPlantsGene:GSBRNA2T00116357001 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR44189 | PFAM:PF00179 | PFscan:PS50127 | ProteinID:CDY03608 | ProteinID:CDY03608.1 |
| SUPFAM:SSF54495 | UniParc:UPI0004EF0080 | MapMan:35.1 | : | : | : |
Description
BnaC03g68670D
Coordinates
chrLK031944:-:837761..838434
Molecular Weight (calculated)
13422.2 Da
IEP (calculated)
9.107
GRAVY (calculated)
-0.183
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFKMGLDLG WASATSKEDN IFCWKGAIKG SIETTVFEGT EYRLSLSFSN DYPFKPPKIK FQTTLMSMAI SAWTFFRING HLLMILLGEL NISSPLNTQA
101: ARLWSNQEEY RKMPPTTA
101: ARLWSNQEEY RKMPPTTA
001: MAAVNGYQGN TPADPPASNG SKQPAAPTKT VDSQSVLKRL QSELMGLMMG GGPGISAFPE EDNIFCWKGT ITGSKDTVFE GTEYRLSLSF SNDYPFKPPK
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA
101: VKFETCCFHP NVDVYGNICL DILQDKWSSA YDVRTILLSI QSLLGEPNIS SPLNTQAAQL WSNQEEYRKM VEKLYKPPSA
Arabidopsis Description
UBC20Ubiquitin-conjugating enzyme E2 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7T3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.