CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089754	Potato	nucleus	29.35	44.26
CDX71988	Canola	nucleus	51.09	29.38
CDY70581	Canola	cytosol	51.09	29.38
CDX67711	Canola	cytosol	51.09	29.38
CDX98253	Canola	cytosol	51.09	29.38
Os04t0580400-01	Rice	cytosol	43.48	28.78
CDY47661	Canola	cytosol	50.0	28.75
CDX88967	Canola	cytosol	50.0	28.75
CDX93982	Canola	cytosol	46.74	26.88
CDY66302	Canola	cytosol	46.74	26.88
Solyc07g021660.1.1	Tomato	extracellular	40.22	26.81
EES12706	Sorghum	mitochondrion	43.48	25.16
Zm00001d002570_P001	Maize	mitochondrion, nucleus	43.48	25.16
EES12705	Sorghum	mitochondrion	42.39	24.53
TraesCS2B01G413400.1	Wheat	peroxisome	41.3	23.9
OQU82197	Sorghum	cytosol	43.48	23.81
TraesCS2A01G395300.2	Wheat	endoplasmic reticulum, extracellular	41.3	21.84
TraesCS2D01G393100.2	Wheat	endoplasmic reticulum	41.3	21.84
CDY45063	Canola	cytosol	29.35	21.09
CDY62383	Canola	nucleus	36.96	20.36
CDY02931	Canola	cytosol, nucleus, plastid	36.96	20.36
CDY53695	Canola	nucleus	36.96	20.36
CDX76101	Canola	cytosol, nucleus, plastid	36.96	20.36
CDY33025	Canola	cytosol	35.87	20.0
CDY40214	Canola	nucleus	35.87	19.76
CDY41239	Canola	nucleus	35.87	19.76
CDY02882	Canola	cytosol, mitochondrion, nucleus	35.87	19.41
CDY32651	Canola	nucleus	35.87	19.41
CDX80292	Canola	cytosol	35.87	18.44
HORVU2Hr1G094030.8	Barley	nucleus, plastid	40.22	17.13
CDY62105	Canola	cytosol, plastid	31.52	16.57
CDY29588	Canola	cytosol, plastid	31.52	16.57
CDY42228	Canola	plastid	30.43	15.47
CDY37132	Canola	cytosol, plastid	30.43	15.47
CDY33445	Canola	nucleus	30.43	15.47
CDY22799	Canola	cytosol, plastid	30.43	15.47
CDY25375	Canola	plastid	30.43	15.38
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	30.43	15.38
CDY03608	Canola	nucleus	19.57	15.25
Zm00001d002572_P002	Maize	cytosol, golgi, mitochondrion, nucleus	39.13	11.11

Protein Annotations

Gene3D:3.10.110.10	MapMan:35.1	EnsemblPlants:CDX73361	ProteinID:CDX73361	ProteinID:CDX73361.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0019789	EnsemblPlantsGene:GSBRNA2T00106540001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179
PFscan:PS50127	PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0004EE9E90	InterPro:Ubc9	:	:	:	:

Description

BnaC05g27450D

Coordinates

chrLK031798:-:2328585..2330169

Molecular Weight (calculated)

10779.7 Da

IEP (calculated)

4.253

GRAVY (calculated)

-0.178

Length

92 amino acids

Sequence
(BLAST)

1: MRQQHLHLLT PLTDWEGGLF PLTMHFSEDY PSKPPNCTFP PGFFHLNVYP SGTVCLSIFE DSMYEFLALR WFDFFNGETE DEACQAELWL KV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.