CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76101	Canola	cytosol, nucleus, plastid	99.4	99.4
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	98.8	98.8
CDY62383	Canola	nucleus	95.81	95.81
CDY53695	Canola	nucleus	95.81	95.81
CDY40214	Canola	nucleus	89.82	89.82
CDY41239	Canola	nucleus	88.62	88.62
PGSC0003DMT400060483	Potato	cytosol, nucleus, plastid	89.82	88.24
PGSC0003DMT400060478	Potato	cytosol, nucleus, plastid	88.62	88.1
Solyc05g054550.2.1	Tomato	cytosol, nucleus, plastid	88.62	87.06
VIT_13s0019g00910.t01	Wine grape	plastid	86.83	86.31
Solyc05g054540.2.1	Tomato	plastid	86.83	85.29
Solyc04g011430.2.1	Tomato	cytosol	83.83	84.85
PGSC0003DMT400071311	Potato	nucleus	83.23	84.24
GSMUA_Achr6P34220_001	Banana	plastid	84.43	83.93
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	82.63	82.14
CDY32651	Canola	nucleus	83.23	81.76
Os01t0839700-01	Rice	cytosol, nucleus, plastid	82.63	81.66
CDY02882	Canola	cytosol, mitochondrion, nucleus	82.63	81.18
CDY33025	Canola	cytosol	79.04	80.0
Zm00001d038376_P001	Maize	extracellular	80.84	79.88
TraesCS1D01G284200.1	Wheat	cytosol, nucleus, plastid	80.84	79.88
TraesCS1A01G285200.1	Wheat	cytosol, nucleus, plastid	80.84	79.88
Os05t0460200-01	Rice	cytosol, nucleus, plastid	80.84	79.88
TraesCS3D01G351600.1	Wheat	cytosol, nucleus, plastid	80.24	79.29
TraesCS3B01G390400.1	Wheat	cytosol, nucleus, plastid	80.24	79.29
TraesCS3A01G357700.1	Wheat	cytosol, nucleus, plastid	80.24	79.29
HORVU1Hr1G072200.2	Barley	cytosol	80.24	79.29
Zm00001d012421_P003	Maize	cytosol, nucleus, plastid	79.64	78.7
EES03856	Sorghum	cytosol, nucleus, plastid	79.64	78.7
Zm00001d042929_P001	Maize	cytosol, nucleus, plastid	79.04	78.11
AT3G55380.2	Thale cress	nucleus	92.81	77.11
CDX80292	Canola	cytosol	79.04	73.74
KXG22164	Sorghum	cytosol, nucleus, plastid	74.25	72.09
GSMUA_Achr5P08370_001	Banana	cytosol	57.48	70.59
TraesCS1B01G294400.2	Wheat	plastid	80.84	67.5
Zm00001d010534_P001	Maize	cytosol	80.84	56.96
GSMUA_Achr5P08330_001	Banana	extracellular, golgi, vacuole	31.74	55.79
HORVU3Hr1G086540.2	Barley	endoplasmic reticulum, golgi, plastid	80.24	52.96
Zm00001d040631_P001	Maize	cytosol	55.69	40.97
CDY45063	Canola	cytosol	29.94	39.06
CDX73361	Canola	extracellular	20.36	36.96
CDX67711	Canola	cytosol	32.34	33.75
CDX88967	Canola	cytosol	32.34	33.75
CDX98253	Canola	cytosol	32.34	33.75
CDY70581	Canola	cytosol	32.34	33.75
CDY47661	Canola	cytosol	31.74	33.12
CDY62105	Canola	cytosol, plastid	34.13	32.57
CDY29588	Canola	cytosol, plastid	34.13	32.57
CDX71988	Canola	nucleus	31.14	32.5
CDY42228	Canola	plastid	34.73	32.04
CDY37132	Canola	cytosol, plastid	34.13	31.49
CDY33445	Canola	nucleus	34.13	31.49
CDY22799	Canola	cytosol, plastid	34.13	31.49
CDY24563	Canola	cytosol, nucleus, peroxisome, plastid	34.13	31.32
CDY25375	Canola	plastid	34.13	31.32
CDX93982	Canola	cytosol	28.74	30.0
CDY66302	Canola	cytosol	28.74	30.0
CDY03608	Canola	nucleus	20.96	29.66
Zm00001d008383_P001	Maize	plastid	26.35	19.13
Zm00001d009034_P002	Maize	nucleus	41.92	18.09
Zm00001d029705_P032	Maize	plasma membrane	29.34	9.01
Zm00001d005779_P153	Maize	plasma membrane	19.76	5.5

Protein Annotations

MapMan:19.2.2.1.6.1.1	MapMan:19.2.4.1.2	Gene3D:3.10.110.10	GO:A0A078EP42	EnsemblPlants:CDY02931	ProteinID:CDY02931
ProteinID:CDY02931.1	EnsemblPlantsGene:GSBRNA2T00115201001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR24067	PANTHER:PTHR24067:SF174	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EC7AF8	SEG:seg

Description

BnaC04g25550D

Coordinates

chrLK031938:+:635021..636902

Molecular Weight (calculated)

18770.2 Da

IEP (calculated)

5.255

GRAVY (calculated)

-0.468

Length

167 amino acids

Sequence
(BLAST)

001: MANNQASLLL QKQLKDLCKK PVDGFSAGLV DENNVFQWSV SIMGPPDTLY EGGFFNAIMT FPQDYPNKPP TVKFTSEVWH PNVYSDGKVC ISILHPPGDD
101: PNGYELASER WNPVHTVESI VLSIISMLSG PNDESPANVE AAKEWRDNRA EFRKKVSRCV RRSQEML

Best Arabidopsis Sequence Match ( AT3G55380.1 )
(BLAST)

001: MANNQASLLL QKQLKDLCKK PVDGFSAGLV DEKNVFQWSV SIMGPPDTLY EGGFFNAIMS FPENYPVSPP TVTFTSEMWH PNVYSDGKVC ISILHPPGDD
101: PHGYELASER WTPVHTVESI VLSIISMLSG PNDESPANVE AAKEWRDNRA EFRKKVSRCV RRSQEML

Arabidopsis Description

UBC14Ubiquitin-conjugating enzyme 14 [Source:UniProtKB/TrEMBL;Acc:F4IWU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.