Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 100.0 | 100.0 |
| TraesCS3A01G357700.1 | Wheat | cytosol, nucleus, plastid | 100.0 | 100.0 |
| Os01t0839700-01 | Rice | cytosol, nucleus, plastid | 94.08 | 94.08 |
| EES03856 | Sorghum | cytosol, nucleus, plastid | 92.9 | 92.9 |
| Zm00001d012421_P003 | Maize | cytosol, nucleus, plastid | 92.31 | 92.31 |
| GSMUA_Achr6P34220_001 | Banana | plastid | 90.53 | 91.07 |
| Zm00001d042929_P001 | Maize | cytosol, nucleus, plastid | 89.35 | 89.35 |
| VIT_08s0007g00120.t01 | Wine grape | mitochondrion | 88.17 | 88.69 |
| KRH23052 | Soybean | nucleus | 85.21 | 86.75 |
| KRH10280 | Soybean | nucleus | 85.21 | 86.75 |
| VIT_13s0019g00910.t01 | Wine grape | plastid | 85.8 | 86.31 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 85.8 | 86.31 |
| AT5G59300.1 | Thale cress | nucleus | 84.62 | 86.14 |
| PGSC0003DMT400060478 | Potato | cytosol, nucleus, plastid | 85.21 | 85.71 |
| KRH29815 | Soybean | cytosol | 84.02 | 85.54 |
| AT3G46460.1 | Thale cress | cytosol | 84.02 | 85.54 |
| KRH24817 | Soybean | cytosol, nucleus, plastid | 84.02 | 85.03 |
| VIT_06s0004g04430.t01 | Wine grape | cytosol, nucleus, plastid | 85.21 | 84.71 |
| Solyc05g054550.2.1 | Tomato | cytosol, nucleus, plastid | 85.21 | 84.71 |
| PGSC0003DMT400060483 | Potato | cytosol, nucleus, plastid | 85.21 | 84.71 |
| Bra002579.1-P | Field mustard | cytosol | 79.29 | 84.28 |
| Solyc04g011430.2.1 | Tomato | cytosol | 82.25 | 84.24 |
| PGSC0003DMT400071311 | Potato | nucleus | 81.66 | 83.64 |
| CDY33025 | Canola | cytosol | 81.07 | 83.03 |
| CDY62383 | Canola | nucleus | 81.66 | 82.63 |
| Bra003210.1-P | Field mustard | nucleus | 81.66 | 82.63 |
| CDY53695 | Canola | nucleus | 81.66 | 82.63 |
| Solyc05g054540.2.1 | Tomato | plastid | 82.84 | 82.35 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 82.25 | 81.76 |
| CDY32651 | Canola | nucleus | 82.25 | 81.76 |
| Bra020324.1-P | Field mustard | nucleus | 82.25 | 81.76 |
| PGSC0003DMT400023134 | Potato | nucleus | 79.29 | 80.24 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 79.29 | 80.24 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 79.29 | 80.24 |
| Solyc09g009720.1.1 | Tomato | nucleus | 79.29 | 80.24 |
| GSMUA_Achr5P08370_001 | Banana | cytosol | 64.5 | 80.15 |
| CDY41239 | Canola | nucleus | 78.7 | 79.64 |
| Bra007157.1-P | Field mustard | nucleus | 78.7 | 79.64 |
| CDY40214 | Canola | nucleus | 78.7 | 79.64 |
| Bra014751.1-P | Field mustard | cytosol, nucleus, plastid | 78.7 | 79.64 |
| TraesCS1B01G294400.2 | Wheat | plastid | 92.31 | 78.0 |
| CDX80292 | Canola | cytosol | 80.47 | 75.98 |
| HORVU3Hr1G086540.2 | Barley | endoplasmic reticulum, golgi, plastid | 100.0 | 66.8 |
| AT3G55380.2 | Thale cress | nucleus | 79.29 | 66.67 |
| Zm00001d040631_P001 | Maize | cytosol | 62.72 | 46.7 |
| TraesCS2B01G413400.1 | Wheat | peroxisome | 31.95 | 33.96 |
| TraesCS4B01G346600.2 | Wheat | cytosol | 31.95 | 33.54 |
| TraesCS1B01G214400.2 | Wheat | nucleus | 29.59 | 29.76 |
| TraesCS3B01G216000.2 | Wheat | plastid | 34.32 | 26.48 |
| Zm00001d009034_P002 | Maize | nucleus | 47.93 | 20.93 |
| Zm00001d008383_P001 | Maize | plastid | 28.4 | 20.87 |
| Zm00001d029705_P032 | Maize | plasma membrane | 30.77 | 9.56 |
| Zm00001d005779_P153 | Maize | plasma membrane | 21.89 | 6.17 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G390400.1 | EnsemblPlantsGene:TraesCS3B01G390400 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | ncoils:Coil | PANTHER:PTHR24067 | PANTHER:PTHR24067:SF237 | PFAM:PF00179 |
| PFscan:PS50127 | ScanProsite:PS00183 | SEG:seg | SMART:SM00212 | SUPFAM:SSF54495 | TIGR:cd00195 |
| MapMan:19.2.2.1.6.1.1 | MapMan:19.2.4.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:614915456..614921374
Molecular Weight (calculated)
18990.4 Da
IEP (calculated)
4.990
GRAVY (calculated)
-0.475
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MATASSQASL LLQKQLRDLA KHPVDGFSAG LVDDSNVFEW QVTIIGPPET LYDGGYFNAI MSFPQNYPNS PPTVRFTSEM WHPNVYPDGR VCISILHPPG
101: DDPNGYELAS ERWTPVHTVE SIVLSIISML SSPNDESPAN IEAAKDWREK QDEFKKKVRR AVRKSQEML
101: DDPNGYELAS ERWTPVHTVE SIVLSIISML SSPNDESPAN IEAAKDWREK QDEFKKKVRR AVRKSQEML
001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF
Arabidopsis Description
UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.