Factsheet for Bra002579.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33025	Canola	cytosol	96.86	93.33
AT3G46460.1	Thale cress	cytosol	93.08	89.16
Bra020324.1-P	Field mustard	nucleus	90.57	84.71
CDX80292	Canola	cytosol	94.34	83.8
KRH23052	Soybean	nucleus	87.42	83.73
KRH10280	Soybean	nucleus	87.42	83.73
KRH29815	Soybean	cytosol	86.16	82.53
KRH24817	Soybean	cytosol, nucleus, plastid	86.16	82.04
Os01t0839700-01	Rice	cytosol, nucleus, plastid	86.79	81.66
Bra003210.1-P	Field mustard	nucleus	84.91	80.84
Zm00001d038376_P001	Maize	extracellular	84.28	79.29
TraesCS3D01G351600.1	Wheat	cytosol, nucleus, plastid	84.28	79.29
TraesCS3B01G390400.1	Wheat	cytosol, nucleus, plastid	84.28	79.29
TraesCS3A01G357700.1	Wheat	cytosol, nucleus, plastid	84.28	79.29
GSMUA_Achr6P34220_001	Banana	plastid	83.65	79.17
Bra007157.1-P	Field mustard	nucleus	82.39	78.44
VIT_06s0004g04430.t01	Wine grape	cytosol, nucleus, plastid	83.65	78.24
EES03856	Sorghum	cytosol, nucleus, plastid	83.02	78.11
Os05t0460200-01	Rice	cytosol, nucleus, plastid	83.02	78.11
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	81.76	77.84
Zm00001d012421_P003	Maize	cytosol, nucleus, plastid	82.39	77.51
Zm00001d042929_P001	Maize	cytosol, nucleus, plastid	81.76	76.92
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	81.13	76.79
TraesCS1D01G284200.1	Wheat	cytosol, nucleus, plastid	80.5	75.74
TraesCS1A01G285200.1	Wheat	cytosol, nucleus, plastid	80.5	75.74
HORVU1Hr1G072200.2	Barley	cytosol	79.87	75.15
PGSC0003DMT400023134	Potato	nucleus	78.62	74.85
Solyc09g009720.1.1	Tomato	nucleus	78.62	74.85
GSMUA_Achr5P08370_001	Banana	cytosol	57.86	67.65
KXG22164	Sorghum	cytosol, nucleus, plastid	72.33	66.86
TraesCS1B01G294400.2	Wheat	plastid	80.5	64.0
Zm00001d010534_P001	Maize	cytosol	83.65	56.12
GSMUA_Achr5P08330_001	Banana	extracellular, golgi, vacuole	33.33	55.79
HORVU3Hr1G086540.2	Barley	endoplasmic reticulum, golgi, plastid	84.28	52.96
Zm00001d040631_P001	Maize	cytosol	61.64	43.17
Bra003301.1-P	Field mustard	cytosol	30.82	30.62
Bra014602.1-P	Field mustard	cytosol	30.82	30.62
Bra007363.1-P	Field mustard	cytosol	30.19	30.0
Bra030487.1-P	Field mustard	cytosol, plastid	32.08	29.31
Bra014255.1-P	Field mustard	cytosol	29.56	28.66
Bra018852.1-P	Field mustard	cytosol, plastid	32.08	28.18
Bra035819.1-P	Field mustard	cytosol, plastid	31.45	27.62
Bra038253.1-P	Field mustard	nucleus	31.45	27.62
Bra014406.1-P	Field mustard	cytosol	27.67	27.5
Zm00001d009034_P002	Maize	nucleus	42.77	17.57
Zm00001d008383_P001	Maize	plastid	25.16	17.39
Zm00001d029705_P032	Maize	plasma membrane	27.67	8.09
Zm00001d005779_P153	Maize	plasma membrane	18.87	5.0

Protein Annotations

MapMan:19.2.2.1.6.1.1	MapMan:19.2.4.1.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra002579	EnsemblPlants:Bra002579.1	EnsemblPlants:Bra002579.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000608	InterPro:IPR016135	UniProt:M4CEE8
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24067	PANTHER:PTHR24067:SF237	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002543B11	SEG:seg

Description

AT3G46460 (E=1e-079) UBC13 | UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase

Coordinates

chrA10:-:8772278..8773351

Molecular Weight (calculated)

18025.3 Da

IEP (calculated)

4.998

GRAVY (calculated)

-0.458

Length

159 amino acids

Sequence
(BLAST)

001: MVKNTIDYLC KHPVDGFSAG LVDEKNIFEW NVTIIGPPDT LYEGGFFNAI MSFPQNYPNS PPTVRFTSDM WHPNVYSDGR VCISILHPPG DDPSGYELAS
101: ERWTPVHTVE SIMLSIISML SGPNDESPAN VEAAKEWREK RDEFKKKVSR CVRKSQEML

Best Arabidopsis Sequence Match ( AT5G59300.1 )
(BLAST)

001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF

Arabidopsis Description

UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.