Factsheet for Bra020324.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
vacuole 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32651	Canola	nucleus	100.0	100.0
AT5G59300.1	Thale cress	nucleus	92.35	94.58
Bra002579.1-P	Field mustard	cytosol	84.71	90.57
KRH23052	Soybean	nucleus	86.47	88.55
KRH10280	Soybean	nucleus	86.47	88.55
KRH29815	Soybean	cytosol	85.29	87.35
KRH24817	Soybean	cytosol, nucleus, plastid	84.71	86.23
Zm00001d038376_P001	Maize	extracellular	84.71	85.21
Bra003210.1-P	Field mustard	nucleus	83.53	85.03
Os01t0839700-01	Rice	cytosol, nucleus, plastid	84.12	84.62
GSMUA_Achr6P34220_001	Banana	plastid	82.94	83.93
Os05t0460200-01	Rice	cytosol, nucleus, plastid	82.94	83.43
VIT_06s0004g04430.t01	Wine grape	cytosol, nucleus, plastid	82.94	82.94
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	81.76	82.74
Bra007157.1-P	Field mustard	nucleus	81.18	82.63
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	81.18	82.63
EES03856	Sorghum	cytosol, nucleus, plastid	81.76	82.25
TraesCS3A01G357700.1	Wheat	cytosol, nucleus, plastid	81.76	82.25
TraesCS3B01G390400.1	Wheat	cytosol, nucleus, plastid	81.76	82.25
TraesCS3D01G351600.1	Wheat	cytosol, nucleus, plastid	81.76	82.25
Zm00001d012421_P003	Maize	cytosol, nucleus, plastid	81.18	81.66
TraesCS1D01G284200.1	Wheat	cytosol, nucleus, plastid	80.59	81.07
TraesCS1A01G285200.1	Wheat	cytosol, nucleus, plastid	80.59	81.07
Zm00001d042929_P001	Maize	cytosol, nucleus, plastid	80.59	81.07
HORVU1Hr1G072200.2	Barley	cytosol	80.0	80.47
Solyc09g009720.1.1	Tomato	nucleus	78.24	79.64
PGSC0003DMT400023134	Potato	nucleus	78.24	79.64
KXG22164	Sorghum	cytosol, nucleus, plastid	73.53	72.67
GSMUA_Achr5P08370_001	Banana	cytosol	57.65	72.06
TraesCS1B01G294400.2	Wheat	plastid	81.76	69.5
Zm00001d010534_P001	Maize	cytosol	83.53	59.92
GSMUA_Achr5P08330_001	Banana	extracellular, golgi, vacuole	32.94	58.95
HORVU3Hr1G086540.2	Barley	endoplasmic reticulum, golgi, plastid	81.76	54.94
Zm00001d040631_P001	Maize	cytosol	55.29	41.41
Bra003301.1-P	Field mustard	cytosol	31.18	33.12
Bra014602.1-P	Field mustard	cytosol	31.18	33.12
Bra007363.1-P	Field mustard	cytosol	30.59	32.5
Bra030487.1-P	Field mustard	cytosol, plastid	31.18	30.46
Bra014406.1-P	Field mustard	cytosol	27.65	29.38
Bra018852.1-P	Field mustard	cytosol, plastid	31.18	29.28
Bra035819.1-P	Field mustard	cytosol, plastid	31.18	29.28
Bra038253.1-P	Field mustard	nucleus	31.18	29.28
Bra014255.1-P	Field mustard	cytosol	27.06	28.05
Zm00001d008383_P001	Maize	plastid	25.29	18.7
Zm00001d009034_P002	Maize	nucleus	41.76	18.35
Zm00001d029705_P032	Maize	plasma membrane	27.06	8.46
Zm00001d005779_P153	Maize	plasma membrane	20.0	5.67

Protein Annotations

MapMan:19.2.2.1.6.1.1	MapMan:19.2.4.1.2	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra020324	EnsemblPlants:Bra020324.1	EnsemblPlants:Bra020324.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740
InterPro:IPR000608	InterPro:IPR016135	UniProt:M4DUY1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24067	PANTHER:PTHR24067:SF237	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002543672	SEG:seg	:	:	:

Description

AT3G46460 (E=2e-075) UBC13 | UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase

Coordinates

chrA02:+:6225023..6226036

Molecular Weight (calculated)

19175.9 Da

IEP (calculated)

5.648

GRAVY (calculated)

-0.415

Length

170 amino acids

Sequence
(BLAST)

001: MASQASLLLQ KQLKGTPQKF NMHPVDGFSA GLVDEKNIFE WSVTIIGPPD TLYEGGFFNA IMTFPQNYPN SPPSVRFISD MWHPNVYSDG RVCISILHPP
101: GDDPSGYELA SERWMPVHTV ESIMLSIISM LSGPNDESPA NVEAAKEWRE KRDEFKKKVS RCVRKSQEML

Best Arabidopsis Sequence Match ( AT5G59300.1 )
(BLAST)

001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF

Arabidopsis Description

UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.