CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012421_P003	Maize	cytosol, nucleus, plastid	98.22	98.22
Zm00001d042929_P001	Maize	cytosol, nucleus, plastid	95.27	95.27
Os01t0839700-01	Rice	cytosol, nucleus, plastid	95.27	95.27
TraesCS3D01G351600.1	Wheat	cytosol, nucleus, plastid	92.9	92.9
TraesCS3B01G390400.1	Wheat	cytosol, nucleus, plastid	92.9	92.9
TraesCS3A01G357700.1	Wheat	cytosol, nucleus, plastid	92.9	92.9
VIT_08s0007g00120.t01	Wine grape	mitochondrion	89.94	90.48
GSMUA_Achr6P34220_001	Banana	plastid	89.94	90.48
KRH24817	Soybean	cytosol, nucleus, plastid	86.98	88.02
KRH29815	Soybean	cytosol	86.39	87.95
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	86.98	87.5
KRH23052	Soybean	nucleus	85.21	86.75
KRH10280	Soybean	nucleus	85.21	86.75
AT5G59300.1	Thale cress	nucleus	84.62	86.14
VIT_06s0004g04430.t01	Wine grape	cytosol, nucleus, plastid	86.39	85.88
AT3G46460.1	Thale cress	cytosol	84.02	85.54
VIT_13s0019g00910.t01	Wine grape	plastid	84.02	84.52
KXG22164	Sorghum	cytosol, nucleus, plastid	85.21	83.72
Solyc04g011430.2.1	Tomato	cytosol	81.66	83.64
Solyc05g054550.2.1	Tomato	cytosol, nucleus, plastid	84.02	83.53
PGSC0003DMT400060478	Potato	cytosol, nucleus, plastid	82.84	83.33
GSMUA_Achr5P08370_001	Banana	cytosol	66.86	83.09
PGSC0003DMT400071311	Potato	nucleus	81.07	83.03
Bra002579.1-P	Field mustard	cytosol	78.11	83.02
PGSC0003DMT400060483	Potato	cytosol, nucleus, plastid	82.84	82.35
CDY62383	Canola	nucleus	81.07	82.04
CDY53695	Canola	nucleus	81.07	82.04
Bra003210.1-P	Field mustard	nucleus	81.07	82.04
CDY33025	Canola	cytosol	79.88	81.82
Bra020324.1-P	Field mustard	nucleus	82.25	81.76
CDY02882	Canola	cytosol, mitochondrion, nucleus	82.25	81.76
CDY32651	Canola	nucleus	82.25	81.76
Solyc05g054540.2.1	Tomato	plastid	80.47	80.0
CDX76101	Canola	cytosol, nucleus, plastid	78.7	79.64
Bra007157.1-P	Field mustard	nucleus	78.7	79.64
CDY41239	Canola	nucleus	78.7	79.64
CDY40214	Canola	nucleus	78.7	79.64
CDY02931	Canola	cytosol, nucleus, plastid	78.7	79.64
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	78.11	79.04
PGSC0003DMT400023134	Potato	nucleus	77.51	78.44
Solyc09g009720.1.1	Tomato	nucleus	77.51	78.44
CDX80292	Canola	cytosol	79.88	75.42
AT3G55380.2	Thale cress	nucleus	78.7	66.17
HORVU3Hr1G086540.2	Barley	endoplasmic reticulum, golgi, plastid	92.9	62.06
Zm00001d040631_P001	Maize	cytosol	64.5	48.02
EES12705	Sorghum	mitochondrion	31.36	33.33
EER95612	Sorghum	nucleus	31.36	33.12
EES12706	Sorghum	mitochondrion	30.77	32.7
EER92016	Sorghum	nucleus	29.59	31.25
OQU82197	Sorghum	cytosol	30.77	30.95
KXG32249	Sorghum	plastid	32.54	29.89
OQU80782	Sorghum	nucleus, plastid	32.54	29.26
Zm00001d009034_P002	Maize	nucleus	47.93	20.93
Zm00001d008383_P001	Maize	plastid	28.4	20.87
Zm00001d029705_P032	Maize	plasma membrane	30.18	9.38
Zm00001d005779_P153	Maize	plasma membrane	21.3	6.0

Protein Annotations

MapMan:19.2.2.1.6.1.1	MapMan:19.2.4.1.2	Gene3D:3.10.110.10	EntrezGene:8085448	UniProt:C5XPM8	ncoils:Coil
EnsemblPlants:EES03856	ProteinID:EES03856	ProteinID:EES03856.1	GO:GO:0000166	GO:GO:0000209	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0061630
InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24067
PANTHER:PTHR24067:SF237	MetaCyc:PWY-7511	SMART:SM00212	EnsemblPlantsGene:SORBI_3003G350300	SUPFAM:SSF54495	unigene:Sbi.6171
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001A858E7	RefSeq:XP_002458736.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:66990579..66994382

Molecular Weight (calculated)

19108.6 Da

IEP (calculated)

5.259

GRAVY (calculated)

-0.470

Length

169 amino acids

Sequence
(BLAST)

001: MAATTSQASL LLQKQLRDLA KHPVDGFSAG LVDDSNVFEW QVTIIGPPDT LYDGGYFNAI MSFPQNYPNS PPSVRFTSEM WHPNVYPDGR VCISILHPPG
101: EDPNGYELAS ERWTPVHTVE SIVLSIISML SSPNDESPAN IEAAKEWREK REDFKKKVRR IVRKSQEMF

Best Arabidopsis Sequence Match ( AT5G59300.1 )
(BLAST)

001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF

Arabidopsis Description

UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.