CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97813
OQU78332
OQU87495

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	EER97813	AT2G39760.1	21798944
AT3G57870.1	OQU78332	AT5G56630.1	21798944
AT3G57870.1	OQU87495	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G203200.1	Wheat	nucleus	96.88	96.27
TraesCS1A01G199500.1	Wheat	nucleus	96.88	96.27
Zm00001d047354_P001	Maize	nucleus	96.25	96.25
EER95612	Sorghum	nucleus	94.38	94.38
Os10t0536000-01	Rice	cytosol	93.75	93.75
TraesCS1B01G214400.2	Wheat	nucleus	96.88	92.26
GSMUA_Achr3P05370_001	Banana	cytosol	91.25	91.25
KRH04554	Soybean	nucleus	90.62	90.62
KRH57897	Soybean	nucleus	90.62	90.62
KRH28435	Soybean	cytosol	90.0	90.57
VIT_07s0031g00160.t01	Wine grape	nucleus	91.25	90.12
KRH77039	Soybean	cytosol	89.38	89.94
Solyc03g044260.2.1	Tomato	nucleus	88.75	88.75
GSMUA_Achr9P14150_001	Banana	nucleus	88.12	88.12
Solyc02g093110.2.1	Tomato	nucleus	88.12	88.12
AT3G57870.1	Thale cress	cytosol	86.88	86.88
HORVU1Hr1G051610.3	Barley	nucleus	96.25	86.52
CDX93982	Canola	cytosol	84.38	84.38
Bra014406.1-P	Field mustard	cytosol	83.75	83.75
CDY66302	Canola	cytosol	83.75	83.75
PGSC0003DMT400016581	Potato	nucleus	82.5	78.57
PGSC0003DMT400025497	Potato	extracellular	65.0	75.36
EES12705	Sorghum	mitochondrion	70.62	71.07
EES12706	Sorghum	mitochondrion	69.38	69.81
VIT_18s0001g10100.t01	Wine grape	nucleus	81.88	67.18
Solyc07g021670.1.1	Tomato	cytosol, mitochondrion	23.75	63.33
OQU82197	Sorghum	cytosol	63.75	60.71
PGSC0003DMT400014261	Potato	nucleus	30.62	53.26
KXG32249	Sorghum	plastid	35.0	30.43
EES03856	Sorghum	cytosol, nucleus, plastid	31.25	29.59
OQU80782	Sorghum	nucleus, plastid	33.75	28.72
KXG22164	Sorghum	cytosol, nucleus, plastid	28.75	26.74

Protein Annotations

MapMan:19.2.2.2.3	Gene3D:3.10.110.10	EntrezGene:8061341	UniProt:C5WUE8	EnsemblPlants:EER92016	ProteinID:EER92016
ProteinID:EER92016.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016925	GO:GO:0019538
GO:GO:0019789	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	MetaCyc:PWY-7511	SMART:SM00212	EnsemblPlantsGene:SORBI_3001G314500	SUPFAM:SSF54495
unigene:Sbi.1323	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001A825B3	InterPro:Ubc9
RefSeq:XP_002465018.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:60267557..60269622

Molecular Weight (calculated)

17992.4 Da

IEP (calculated)

8.462

GRAVY (calculated)

-0.567

Length

160 amino acids

Sequence
(BLAST)

001: MSGGIARGRL AEERKAWRKN HPHGFVARPE TLADGSANLM VWNCTIPGKQ GTDWESGYYP LTLHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTDGYHLFIQ DPAEYKRRVR LQAKQYPALV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.