CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92178
KRG97837
KRH31032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	KRG97837	AT2G39760.1	21798944
AT3G57870.1	KRH31032	AT2G39760.1	21798944
AT3G57870.1	KRG92178	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28435	Soybean	cytosol	98.74	98.74
KRH04554	Soybean	nucleus	96.23	95.62
KRH57897	Soybean	nucleus	96.23	95.62
GSMUA_Achr1P03640_001	Banana	nucleus	94.97	94.38
VIT_07s0031g00160.t01	Wine grape	nucleus	94.97	93.21
GSMUA_AchrUn_...	Banana	nucleus	93.08	92.5
EER95612	Sorghum	nucleus	93.08	92.5
Bra014602.1-P	Field mustard	cytosol	92.45	91.88
CDX88967	Canola	cytosol	92.45	91.88
CDY70581	Canola	cytosol	92.45	91.88
Os03t0123100-01	Rice	cytosol	92.45	91.88
TraesCS4B01G346600.2	Wheat	cytosol	92.45	91.3
TraesCS4D01G341600.2	Wheat	cytosol	92.45	91.3
TraesCS5A01G515400.1	Wheat	cytosol	92.45	91.3
Bra003301.1-P	Field mustard	cytosol	91.82	91.25
Zm00001d027427_P001	Maize	nucleus	91.82	91.25
Zm00001d048473_P003	Maize	nucleus	91.82	91.25
CDY47661	Canola	cytosol	91.82	91.25
Bra007363.1-P	Field mustard	cytosol	91.82	91.25
CDX67711	Canola	cytosol	91.82	91.25
CDX98253	Canola	cytosol	91.82	91.25
GSMUA_Achr3P05370_001	Banana	cytosol	91.19	90.62
CDX71988	Canola	nucleus	91.19	90.62
AT3G57870.1	Thale cress	cytosol	90.57	90.0
Zm00001d047354_P001	Maize	nucleus	89.94	89.38
EER92016	Sorghum	nucleus	89.94	89.38
TraesCS1D01G203200.1	Wheat	nucleus	89.31	88.2
TraesCS1A01G199500.1	Wheat	nucleus	89.31	88.2
Os10t0536000-01	Rice	cytosol	88.68	88.12
GSMUA_Achr9P14150_001	Banana	nucleus	86.16	85.62
PGSC0003DMT400020524	Potato	cytosol	86.16	85.62
Solyc12g088680.1.1	Tomato	cytosol	85.53	85.0
TraesCS1B01G214400.2	Wheat	nucleus	89.31	84.52
PGSC0003DMT400039840	Potato	mitochondrion	84.91	84.38
Solyc04g078620.2.1	Tomato	nucleus	84.28	83.75
Zm00001d029740_P002	Maize	nucleus	84.28	83.75
HORVU1Hr1G051610.3	Barley	nucleus	88.68	79.21
HORVU4Hr1G084760.5	Barley	plastid	89.31	73.58
VIT_18s0001g10100.t01	Wine grape	nucleus	83.65	68.21
KRH23052	Soybean	nucleus	33.33	31.93
KRH10280	Soybean	nucleus	33.33	31.93
KRH29815	Soybean	cytosol	32.7	31.33
KRH24817	Soybean	cytosol, nucleus, plastid	32.7	31.14
KRH24100	Soybean	cytosol, plastid	32.7	28.89
KRH34891	Soybean	nucleus, plastid	32.7	27.96
KRG91877	Soybean	cytosol, plastid	31.45	26.88
KRH29075	Soybean	cytosol, golgi, peroxisome, plastid	28.3	24.86

Protein Annotations

EntrezGene:100803022	MapMan:19.2.2.2.3	Gene3D:3.10.110.10	EMBL:ACUP02000653	EnsemblPlantsGene:GLYMA_01G188900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016925	GO:GO:0019538	GO:GO:0019789	UniProt:I1J996
InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH77039	ProteinID:KRH77039	ProteinID:KRH77039.1	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	MetaCyc:PWY-7511	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001BFBE6B	InterPro:Ubc9

Description

hypothetical protein

Coordinates

chr1:-:52405164..52409369

Molecular Weight (calculated)

17988.4 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.583

Length

159 amino acids

Sequence
(BLAST)

001: MSGIARGRLA EERKSWRKNH PHGFVAKPET LPDATVNLMV WHCTIPGKAG TDWEGGYFPL TMHFSEDYPS KPPKCKFPQG FFHPNVYPSG TVCLSILNED
101: SGWRPAITVK QILVGIQDLL DQPNPADPAQ TEGYHLFIQD AAEYKRRVRQ QSKQYPPLV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.