Factsheet for PGSC0003DMT400020524

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044886
PGSC0003DMT400069942
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	PGSC0003DMT400069942	AT2G39760.1	21798944
AT3G57870.1	PGSC0003DMT400044886	AT5G56630.1	21798944
AT3G57870.1	PGSC0003DMT400070848	AT5G56630.1	21798944
AT3G57870.1	PGSC0003DMT400095815	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078620.2.1	Tomato	nucleus	95.62	95.62
PGSC0003DMT400039840	Potato	mitochondrion	87.5	87.5
KRH28435	Soybean	cytosol	86.25	86.79
KRH57897	Soybean	nucleus	86.25	86.25
KRH04554	Soybean	nucleus	86.25	86.25
KRH77039	Soybean	cytosol	85.62	86.16
AT3G57870.1	Thale cress	cytosol	85.62	85.62
CDX98253	Canola	cytosol	85.0	85.0
Bra003301.1-P	Field mustard	cytosol	85.0	85.0
Bra014602.1-P	Field mustard	cytosol	85.0	85.0
CDX67711	Canola	cytosol	85.0	85.0
CDY47661	Canola	cytosol	85.0	85.0
CDX88967	Canola	cytosol	85.0	85.0
Bra007363.1-P	Field mustard	cytosol	84.38	84.38
CDX71988	Canola	nucleus	83.75	83.75
CDY70581	Canola	cytosol	83.75	83.75
PGSC0003DMT400046775	Potato	nucleus	79.38	78.88
PGSC0003DMT400016581	Potato	nucleus	81.25	77.38
PGSC0003DMT400089754	Potato	nucleus	28.75	75.41
PGSC0003DMT400025497	Potato	extracellular	61.88	71.74
PGSC0003DMT400014261	Potato	nucleus	30.0	52.17
PGSC0003DMT400023134	Potato	nucleus	33.12	31.74
PGSC0003DMT400071311	Potato	nucleus	32.5	31.52
PGSC0003DMT400080256	Potato	cytosol, plastid	34.38	30.9
PGSC0003DMT400060483	Potato	cytosol, nucleus, plastid	31.88	30.0
PGSC0003DMT400060478	Potato	cytosol, nucleus, plastid	31.25	29.76

Protein Annotations

EntrezGene:102588380	MapMan:19.2.2.2.3	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016925	GO:GO:0019538	GO:GO:0019789	InterPro:IPR000608	InterPro:IPR016135
UniProt:M1ADM4	PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400007950	PGSC:PGSC0003DMG400007950	EnsemblPlants:PGSC0003DMT400020524	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002958884	InterPro:Ubc9	RefSeq:XP_006354854.1	SEG:seg

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007950]

Coordinates

chr4:+:67867956..67872308

Molecular Weight (calculated)

18014.3 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.718

Length

160 amino acids

Sequence
(BLAST)

001: MSSGIARGRL AEERKAWRKN HPHGFVAKPE TGPDGTVNLM VWQCSIPGKP STDWEGGHYP ITMHFSEDYP SKPPKCKFPA GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPDDPA QTEGYQLYMQ DTDEYKKRVK QQAKQYPALL

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.