Factsheet for PGSC0003DMT400039840

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044886
PGSC0003DMT400069942
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	PGSC0003DMT400069942	AT2G39760.1	21798944
AT3G57870.1	PGSC0003DMT400044886	AT5G56630.1	21798944
AT3G57870.1	PGSC0003DMT400070848	AT5G56630.1	21798944
AT3G57870.1	PGSC0003DMT400095815	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088680.1.1	Tomato	cytosol	95.0	95.0
PGSC0003DMT400020524	Potato	cytosol	87.5	87.5
KRH77039	Soybean	cytosol	84.38	84.91
KRH28435	Soybean	cytosol	84.38	84.91
CDX88967	Canola	cytosol	83.12	83.12
CDY47661	Canola	cytosol	83.12	83.12
KRH04554	Soybean	nucleus	83.12	83.12
Bra014602.1-P	Field mustard	cytosol	83.12	83.12
KRH57897	Soybean	nucleus	83.12	83.12
AT3G57870.1	Thale cress	cytosol	83.12	83.12
CDX67711	Canola	cytosol	82.5	82.5
CDX98253	Canola	cytosol	82.5	82.5
Bra003301.1-P	Field mustard	cytosol	82.5	82.5
Bra007363.1-P	Field mustard	cytosol	81.88	81.88
CDX71988	Canola	nucleus	81.25	81.25
CDY70581	Canola	cytosol	81.25	81.25
PGSC0003DMT400046775	Potato	nucleus	75.62	75.16
PGSC0003DMT400016581	Potato	nucleus	78.12	74.4
PGSC0003DMT400089754	Potato	nucleus	28.12	73.77
PGSC0003DMT400025497	Potato	extracellular	60.0	69.57
PGSC0003DMT400014261	Potato	nucleus	28.75	50.0
PGSC0003DMT400080256	Potato	cytosol, plastid	35.0	31.46
PGSC0003DMT400023134	Potato	nucleus	31.88	30.54
PGSC0003DMT400071311	Potato	nucleus	31.25	30.3
PGSC0003DMT400060483	Potato	cytosol, nucleus, plastid	30.0	28.24
PGSC0003DMT400060478	Potato	cytosol, nucleus, plastid	29.38	27.98

Protein Annotations

EntrezGene:102581266	MapMan:19.2.2.2.3	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016925	GO:GO:0019538	GO:GO:0019789	InterPro:IPR000608	InterPro:IPR016135
UniProt:M1B8V2	PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400015405	PGSC:PGSC0003DMG400015405	EnsemblPlants:PGSC0003DMT400039840	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000295735E	InterPro:Ubc9	RefSeq:XP_006342638.1	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015405]

Coordinates

chr12:+:56519864..56522473

Molecular Weight (calculated)

17955.4 Da

IEP (calculated)

8.819

GRAVY (calculated)

-0.578

Length

160 amino acids

Sequence
(BLAST)

001: MSDGIARGRL AEERKSWRKN HPHGFVARPE TGADGSVNLM VWNCSIPGKA KTDWEGGFYP ITMNFSEDFP SKPPKCKFPQ GFFHPNVYPS GTICLSILNE
101: DSGWRPAITV KQILVGIQDL LVQPNPSDPA QTEGFQLYMQ DGAEYKKRVR QQAKQYPALV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.