Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g044260.2.1 | Tomato | nucleus | 84.52 | 88.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 80.95 | 85.0 |
| GSMUA_Achr1P03640_001 | Banana | nucleus | 80.36 | 84.38 |
| VIT_07s0031g00160.t01 | Wine grape | nucleus | 80.95 | 83.95 |
| EER95612 | Sorghum | nucleus | 79.76 | 83.75 |
| Os10t0536000-01 | Rice | cytosol | 79.17 | 83.12 |
| GSMUA_Achr3P05370_001 | Banana | cytosol | 79.17 | 83.12 |
| Os03t0123100-01 | Rice | cytosol | 79.17 | 83.12 |
| Zm00001d027427_P001 | Maize | nucleus | 78.57 | 82.5 |
| EER92016 | Sorghum | nucleus | 78.57 | 82.5 |
| Zm00001d047354_P001 | Maize | nucleus | 78.57 | 82.5 |
| Zm00001d048473_P003 | Maize | nucleus | 78.57 | 82.5 |
| TraesCS5A01G515400.1 | Wheat | cytosol | 78.57 | 81.99 |
| TraesCS4D01G341600.2 | Wheat | cytosol | 78.57 | 81.99 |
| TraesCS4B01G346600.2 | Wheat | cytosol | 78.57 | 81.99 |
| TraesCS1D01G203200.1 | Wheat | nucleus | 78.57 | 81.99 |
| TraesCS1A01G199500.1 | Wheat | nucleus | 78.57 | 81.99 |
| GSMUA_Achr9P14150_001 | Banana | nucleus | 77.38 | 81.25 |
| PGSC0003DMT400020524 | Potato | cytosol | 77.38 | 81.25 |
| Zm00001d029740_P002 | Maize | nucleus | 75.0 | 78.75 |
| CDX93982 | Canola | cytosol | 75.0 | 78.75 |
| CDY66302 | Canola | cytosol | 75.0 | 78.75 |
| Bra014406.1-P | Field mustard | cytosol | 75.0 | 78.75 |
| TraesCS1B01G214400.2 | Wheat | nucleus | 78.57 | 78.57 |
| PGSC0003DMT400039840 | Potato | mitochondrion | 74.4 | 78.12 |
| HORVU1Hr1G051610.3 | Barley | nucleus | 79.17 | 74.72 |
| PGSC0003DMT400025497 | Potato | extracellular | 57.74 | 70.29 |
| PGSC0003DMT400046775 | Potato | nucleus | 66.07 | 68.94 |
| HORVU4Hr1G084760.5 | Barley | plastid | 77.98 | 67.88 |
| PGSC0003DMT400089754 | Potato | nucleus | 22.02 | 60.66 |
| PGSC0003DMT400014261 | Potato | nucleus | 30.36 | 55.43 |
| PGSC0003DMT400023134 | Potato | nucleus | 28.57 | 28.74 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 30.36 | 28.65 |
| PGSC0003DMT400071311 | Potato | nucleus | 27.38 | 27.88 |
| PGSC0003DMT400060483 | Potato | cytosol, nucleus, plastid | 26.79 | 26.47 |
| PGSC0003DMT400060478 | Potato | cytosol, nucleus, plastid | 26.19 | 26.19 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016925 |
| GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 | InterPro:IPR016135 | UniProt:M1A7W2 | PFAM:PF00179 |
| EnsemblPlantsGene:PGSC0003DMG400006481 | PGSC:PGSC0003DMG400006481 | EnsemblPlants:PGSC0003DMT400016581 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43927 |
| PANTHER:PTHR43927:SF4 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI0002957300 | InterPro:Ubc9 | : | : | : | : |
Description
Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006481]
Coordinates
chr3:-:7830165..7835288
Molecular Weight (calculated)
18663.2 Da
IEP (calculated)
9.015
GRAVY (calculated)
-0.562
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAGIARGRL AEERKAWRKN HPHGFVAKPE TLPDGSVNLM VWHCSIPGKT GTDWEGGCYP VTIHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTEGYHLFIQ CFGRREATKG DKGLPRHAAR QAARRSPF
101: DSGWRPAITV KQILVGIQDL LDQPNPADPA QTEGYHLFIQ CFGRREATKG DKGLPRHAAR QAARRSPF
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.