Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G346600.2 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5A01G515400.1 | Wheat | cytosol | 99.38 | 99.38 |
| GSMUA_Achr3P05370_001 | Banana | cytosol | 92.55 | 93.12 |
| KRH04554 | Soybean | nucleus | 92.55 | 93.12 |
| KRH57897 | Soybean | nucleus | 92.55 | 93.12 |
| KRH28435 | Soybean | cytosol | 91.93 | 93.08 |
| TraesCS1D01G203200.1 | Wheat | nucleus | 92.55 | 92.55 |
| KRH77039 | Soybean | cytosol | 91.3 | 92.45 |
| VIT_07s0031g00160.t01 | Wine grape | nucleus | 91.93 | 91.36 |
| AT3G57870.1 | Thale cress | cytosol | 88.2 | 88.75 |
| GSMUA_Achr9P14150_001 | Banana | nucleus | 88.2 | 88.75 |
| Solyc02g093110.2.1 | Tomato | nucleus | 87.58 | 88.12 |
| Solyc03g044260.2.1 | Tomato | nucleus | 87.58 | 88.12 |
| Zm00001d029740_P002 | Maize | nucleus | 86.96 | 87.5 |
| CDX93982 | Canola | cytosol | 83.85 | 84.38 |
| Bra014406.1-P | Field mustard | cytosol | 83.23 | 83.75 |
| CDY66302 | Canola | cytosol | 83.23 | 83.75 |
| HORVU4Hr1G084760.5 | Barley | plastid | 95.65 | 79.79 |
| PGSC0003DMT400016581 | Potato | nucleus | 81.99 | 78.57 |
| PGSC0003DMT400025497 | Potato | extracellular | 63.35 | 73.91 |
| VIT_18s0001g10100.t01 | Wine grape | nucleus | 82.61 | 68.21 |
| Solyc07g021670.1.1 | Tomato | cytosol, mitochondrion | 24.84 | 66.67 |
| PGSC0003DMT400014261 | Potato | nucleus | 31.68 | 55.43 |
| TraesCS2D01G393100.2 | Wheat | endoplasmic reticulum | 55.28 | 51.15 |
| TraesCS1D01G284200.1 | Wheat | cytosol, nucleus, plastid | 34.78 | 33.14 |
| TraesCS3D01G351600.1 | Wheat | cytosol, nucleus, plastid | 33.54 | 31.95 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 34.16 | 28.5 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 |
| InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF4 |
| SMART:SM00212 | SUPFAM:SSF54495 | EnsemblPlantsGene:TraesCS4D01G341600 | EnsemblPlants:TraesCS4D01G341600.2 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | InterPro:Ubc9 | TIGR:cd00195 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:498176693..498178947
Molecular Weight (calculated)
18044.4 Da
IEP (calculated)
8.472
GRAVY (calculated)
-0.547
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGIARGR LAEERKAWRK NHPHGFVAKP ETLGDGTVNL MVWHCTIPGK QGTDWEGGYF PLTLHFSEDY PSKPPKCKFP TNFFHPNVYP SGTVCLSILN
101: EDSGWRPAIT VKQILVGIQD LLDQPNPADP AQTDGYHLFI QDPAEYKRRV RAQAKQYPAL V
101: EDSGWRPAIT VKQILVGIQD LLDQPNPADP AQTDGYHLFI QDPAEYKRRV RAQAKQYPAL V
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.