Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014406.1-P | Field mustard | cytosol | 99.38 | 99.38 |
| CDY66302 | Canola | cytosol | 99.38 | 99.38 |
| VIT_07s0031g00160.t01 | Wine grape | nucleus | 86.25 | 85.19 |
| Zm00001d048473_P003 | Maize | nucleus | 85.0 | 85.0 |
| Zm00001d027427_P001 | Maize | nucleus | 85.0 | 85.0 |
| GSMUA_Achr9P14150_001 | Banana | nucleus | 85.0 | 85.0 |
| Os03t0123100-01 | Rice | cytosol | 85.0 | 85.0 |
| EER95612 | Sorghum | nucleus | 85.0 | 85.0 |
| GSMUA_Achr1P03640_001 | Banana | nucleus | 84.38 | 84.38 |
| GSMUA_Achr3P05370_001 | Banana | cytosol | 84.38 | 84.38 |
| Os10t0536000-01 | Rice | cytosol | 84.38 | 84.38 |
| EER92016 | Sorghum | nucleus | 84.38 | 84.38 |
| TraesCS4B01G346600.2 | Wheat | cytosol | 84.38 | 83.85 |
| TraesCS4D01G341600.2 | Wheat | cytosol | 84.38 | 83.85 |
| TraesCS5A01G515400.1 | Wheat | cytosol | 84.38 | 83.85 |
| Solyc03g044260.2.1 | Tomato | nucleus | 83.75 | 83.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 83.75 | 83.75 |
| Zm00001d047354_P001 | Maize | nucleus | 83.75 | 83.75 |
| TraesCS1A01G199500.1 | Wheat | nucleus | 83.75 | 83.23 |
| TraesCS1D01G203200.1 | Wheat | nucleus | 83.75 | 83.23 |
| CDX88967 | Canola | cytosol | 82.5 | 82.5 |
| CDY47661 | Canola | cytosol | 82.5 | 82.5 |
| CDX67711 | Canola | cytosol | 81.88 | 81.88 |
| CDX98253 | Canola | cytosol | 81.88 | 81.88 |
| CDX71988 | Canola | nucleus | 81.25 | 81.25 |
| Solyc02g093110.2.1 | Tomato | nucleus | 81.25 | 81.25 |
| CDY70581 | Canola | cytosol | 81.25 | 81.25 |
| TraesCS1B01G214400.2 | Wheat | nucleus | 83.75 | 79.76 |
| Zm00001d029740_P002 | Maize | nucleus | 79.38 | 79.38 |
| PGSC0003DMT400016581 | Potato | nucleus | 78.75 | 75.0 |
| HORVU1Hr1G051610.3 | Barley | nucleus | 83.12 | 74.72 |
| HORVU4Hr1G084760.5 | Barley | plastid | 84.38 | 69.95 |
| CDX73361 | Canola | extracellular | 26.88 | 46.74 |
| CDY45063 | Canola | cytosol | 33.12 | 41.41 |
| CDY62105 | Canola | cytosol, plastid | 36.88 | 33.71 |
| CDY29588 | Canola | cytosol, plastid | 36.88 | 33.71 |
| CDY37132 | Canola | cytosol, plastid | 36.25 | 32.04 |
| CDY22799 | Canola | cytosol, plastid | 36.25 | 32.04 |
| CDY42228 | Canola | plastid | 35.62 | 31.49 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 35.62 | 31.32 |
| CDY25375 | Canola | plastid | 35.62 | 31.32 |
| CDY33445 | Canola | nucleus | 35.0 | 30.94 |
| CDY62383 | Canola | nucleus | 30.62 | 29.34 |
| CDY53695 | Canola | nucleus | 30.62 | 29.34 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 30.0 | 28.74 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 30.0 | 28.74 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 30.0 | 28.24 |
| CDY03608 | Canola | nucleus | 20.62 | 27.97 |
| CDY32651 | Canola | nucleus | 29.38 | 27.65 |
| CDY33025 | Canola | cytosol | 28.12 | 27.27 |
| CDY40214 | Canola | nucleus | 27.5 | 26.35 |
| CDY41239 | Canola | nucleus | 27.5 | 26.35 |
| CDX80292 | Canola | cytosol | 29.38 | 26.26 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:A0A078DYJ8 | EnsemblPlants:CDX93982 | ProteinID:CDX93982 | ProteinID:CDX93982.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019789 | EnsemblPlantsGene:GSBRNA2T00156839001 | InterPro:IPR000608 | InterPro:IPR016135 |
| PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF4 | MetaCyc:PWY-7511 |
| SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniPathway:UPA00143 |
| UniParc:UPI0004EEBBA8 | InterPro:Ubc9 | : | : | : | : |
Description
BnaC04g21410D
Coordinates
chrLK031878:+:1135184..1136833
Molecular Weight (calculated)
18159.5 Da
IEP (calculated)
8.449
GRAVY (calculated)
-0.709
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGIARGRL TEERKAWRKN HPHAFVAKPE TSSDGTNNLM VWQCIIPGKS GTDWEGGFYP LTLNFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDEPNPNDPA QTEGYQLFVQ DKNEYKRRVK QQAKQYPTVV
101: DYGWRPAITV KQILVGIQDL LDEPNPNDPA QTEGYQLFVQ DKNEYKRRVK QQAKQYPTVV
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.