Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038253.1-P | Field mustard | nucleus | 98.89 | 98.89 |
| CDY33445 | Canola | nucleus | 97.79 | 97.79 |
| CDY25375 | Canola | plastid | 95.58 | 95.05 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 95.58 | 95.05 |
| AT3G20060.1 | Thale cress | plastid | 93.37 | 93.37 |
| CDY62105 | Canola | cytosol, plastid | 88.95 | 92.0 |
| CDY29588 | Canola | cytosol, plastid | 87.85 | 90.86 |
| CDY37132 | Canola | cytosol, plastid | 90.61 | 90.61 |
| CDY22799 | Canola | cytosol, plastid | 90.06 | 90.06 |
| CDY45063 | Canola | cytosol | 59.67 | 84.38 |
| KRH24100 | Soybean | cytosol, plastid | 81.77 | 82.22 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 79.56 | 81.36 |
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 77.9 | 79.21 |
| Solyc11g065190.1.1 | Tomato | plastid | 79.01 | 79.01 |
| GSMUA_Achr3P08740_001 | Banana | cytosol | 72.38 | 71.98 |
| GSMUA_Achr9P17810_001 | Banana | cytosol | 71.82 | 70.27 |
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 71.27 | 69.35 |
| KXG32249 | Sorghum | plastid | 68.51 | 67.39 |
| Os01t0273100-01 | Rice | plastid | 70.72 | 67.02 |
| Zm00001d008260_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 66.85 | 66.12 |
| KRH29075 | Soybean | cytosol, golgi, peroxisome, plastid | 65.75 | 65.75 |
| OQU80782 | Sorghum | nucleus, plastid | 65.75 | 63.3 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 65.19 | 62.43 |
| CDY03608 | Canola | nucleus | 40.33 | 61.86 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 65.75 | 61.66 |
| TraesCS3B01G216000.2 | Wheat | plastid | 71.27 | 58.9 |
| Zm00001d008261_P003 | Maize | nucleus | 55.8 | 39.76 |
| CDX88967 | Canola | cytosol | 32.04 | 36.25 |
| CDX71988 | Canola | nucleus | 32.04 | 36.25 |
| CDY47661 | Canola | cytosol | 32.04 | 36.25 |
| CDX67711 | Canola | cytosol | 32.04 | 36.25 |
| CDY70581 | Canola | cytosol | 32.04 | 36.25 |
| CDX98253 | Canola | cytosol | 32.04 | 36.25 |
| CDY66302 | Canola | cytosol | 31.49 | 35.62 |
| CDX93982 | Canola | cytosol | 31.49 | 35.62 |
| CDY62383 | Canola | nucleus | 32.04 | 34.73 |
| CDY53695 | Canola | nucleus | 32.04 | 34.73 |
| CDX76101 | Canola | cytosol, nucleus, plastid | 32.04 | 34.73 |
| CDY02931 | Canola | cytosol, nucleus, plastid | 32.04 | 34.73 |
| CDY32651 | Canola | nucleus | 29.83 | 31.76 |
| CDY41239 | Canola | nucleus | 29.28 | 31.74 |
| CDY40214 | Canola | nucleus | 29.28 | 31.74 |
| CDY02882 | Canola | cytosol, mitochondrion, nucleus | 29.28 | 31.18 |
| CDY33025 | Canola | cytosol | 28.18 | 30.91 |
| CDX73361 | Canola | extracellular | 15.47 | 30.43 |
| CDX80292 | Canola | cytosol | 28.73 | 29.05 |
Protein Annotations
| MapMan:13.3.4.1.2 | Gene3D:3.10.110.10 | GO:A0A078HZM6 | UniProt:A0A078HZM6 | EnsemblPlants:CDY42228 | ProteinID:CDY42228 |
| ProteinID:CDY42228.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00074445001 | InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR44189 | MetaCyc:PWY-7511 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniPathway:UPA00143 | UniParc:UPI0004EDD0D6 | : | : |
Description
BnaA01g25670DBnaA01g25670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZM6]
Coordinates
chrLK032518:-:259989..261615
Molecular Weight (calculated)
20005.6 Da
IEP (calculated)
4.629
GRAVY (calculated)
-0.419
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVNGYQGN TPAETTPAAT GSKQPAPPSK TVDSQSVLKR LQSELMGLMM GGDPGVSAFP EEDNIFCWKG TITGSNDTVF EGTEYRLSLA FSNDYPFKPP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN P
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN P
001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
Arabidopsis Description
UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.