Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- cytosol 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g075780.1.1 | |
| Solyc11g073060.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20060.1 | Solyc06g075780.1.1 | AT3G46090.1 | 17259181 |
| AT3G20060.1 | Solyc11g073060.1.1 | AT3G46090.1 | 17259181 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080256 | Potato | cytosol, plastid | 97.24 | 98.88 |
| Bra030487.1-P | Field mustard | cytosol, plastid | 80.66 | 83.91 |
| VIT_06s0061g00070.t01 | Wine grape | cytosol | 81.77 | 83.62 |
| CDY29588 | Canola | cytosol, plastid | 80.66 | 83.43 |
| CDY62105 | Canola | cytosol, plastid | 80.11 | 82.86 |
| CDY45063 | Canola | cytosol | 58.01 | 82.03 |
| AT1G50490.1 | Thale cress | plastid | 81.22 | 81.67 |
| KRH24100 | Soybean | cytosol, plastid | 80.66 | 81.11 |
| CDY25375 | Canola | plastid | 80.66 | 80.22 |
| CDY22799 | Canola | cytosol, plastid | 80.11 | 80.11 |
| CDY37132 | Canola | cytosol, plastid | 80.11 | 80.11 |
| Bra018852.1-P | Field mustard | cytosol, plastid | 80.11 | 80.11 |
| Bra035819.1-P | Field mustard | cytosol, plastid | 79.56 | 79.56 |
| CDY24563 | Canola | cytosol, nucleus, peroxisome, plastid | 79.56 | 79.12 |
| CDY42228 | Canola | plastid | 79.01 | 79.01 |
| AT3G20060.1 | Thale cress | plastid | 79.01 | 79.01 |
| CDY33445 | Canola | nucleus | 78.45 | 78.45 |
| Bra038253.1-P | Field mustard | nucleus | 78.45 | 78.45 |
| GSMUA_Achr3P08740_001 | Banana | cytosol | 75.14 | 74.73 |
| GSMUA_Achr9P17810_001 | Banana | cytosol | 72.93 | 71.35 |
| KRH29075 | Soybean | cytosol, golgi, peroxisome, plastid | 68.51 | 68.51 |
| TraesCS3A01G186500.1 | Wheat | cytosol, plastid | 70.17 | 68.28 |
| Os01t0273100-01 | Rice | plastid | 69.61 | 65.97 |
| KXG32249 | Sorghum | plastid | 66.85 | 65.76 |
| Bra014255.1-P | Field mustard | cytosol | 59.12 | 65.24 |
| Zm00001d008260_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 64.64 | 63.93 |
| OQU80782 | Sorghum | nucleus, plastid | 64.09 | 61.7 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 64.09 | 61.38 |
| TraesCS3D01G190400.2 | Wheat | nucleus, plastid | 64.64 | 60.62 |
| CDY03608 | Canola | nucleus | 38.12 | 58.47 |
| TraesCS3B01G216000.2 | Wheat | plastid | 70.17 | 57.99 |
| Solyc02g093110.2.1 | Tomato | nucleus | 33.15 | 37.5 |
| Zm00001d008261_P003 | Maize | nucleus | 52.49 | 37.4 |
| Solyc03g044260.2.1 | Tomato | nucleus | 32.04 | 36.25 |
| Solyc03g112720.2.1 | Tomato | nucleus | 29.83 | 36.24 |
| Solyc12g088680.1.1 | Tomato | cytosol | 31.49 | 35.62 |
| Solyc04g078620.2.1 | Tomato | nucleus | 30.94 | 35.0 |
| Solyc09g009720.1.1 | Tomato | nucleus | 31.49 | 34.13 |
| Solyc04g011430.2.1 | Tomato | cytosol | 30.39 | 33.33 |
| Solyc05g054550.2.1 | Tomato | cytosol, nucleus, plastid | 30.39 | 32.35 |
| Solyc05g054540.2.1 | Tomato | plastid | 29.83 | 31.76 |
| Solyc07g021660.1.1 | Tomato | extracellular | 22.1 | 28.99 |
| Solyc07g021670.1.1 | Tomato | cytosol, mitochondrion | 8.29 | 25.0 |
Protein Annotations
| MapMan:13.3.4.1.2 | Gene3D:3.10.110.10 | GO:GO:0000166 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0030071 |
| GO:GO:0031145 | GO:GO:0031625 | GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | UniProt:K4D9D2 |
| EMBL:KY246912 | PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR44189 | SMART:SM00212 |
| SUPFAM:SSF54495 | EnsemblPlantsGene:Solyc11g065190.1 | EnsemblPlants:Solyc11g065190.1.1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI0002769817 | SEG:seg | : | : | : | : |
Description
UBC20 [Source:UniProtKB/TrEMBL;Acc:K4D9D2]
Coordinates
chr11:-:50518064..50520023
Molecular Weight (calculated)
19999.8 Da
IEP (calculated)
4.947
GRAVY (calculated)
-0.285
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MATMNSGNNS NTPATAAPVI PSPKQTQTTV KTVDTQSVLK RLQSELMALM MSGDSGISAF PEEDNIFCWK GTITGSKDTV FEGTEYKLSL SFPADYPFKP
101: PKVKFETGCF HPNVDVYGNI CLDILQDKWS SAYDVRTILI SIQSLLGEPN ISSPLNTQAA ALWCNQEEYR KMVEKLYKPS V
101: PKVKFETGCF HPNVDVYGNI CLDILQDKWS SAYDVRTILI SIQSLLGEPN ISSPLNTQAA ALWCNQEEYR KMVEKLYKPS V
001: MATVNGYTGN TPAATTPAAT GSKQSAPPTK TVDSHSVLKR LQSELMGLMM GADPGISAFP EEDNIFCWKG TITGSKDTVF EGTEYRLSLT FSNDYPFKSP
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
101: KVKFETCCFH PNVDLYGNIC LDILQDKWSS AYDVRTILLS IQSLLGEPNI SSPLNNQAAQ LWSNQEEYRK MVEKLYKPLN A
Arabidopsis Description
UBC19UBC19 [Source:UniProtKB/TrEMBL;Acc:A0A178V7W3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.