Factsheet for Solyc05g054540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
vacuole 1
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060483	Potato	cytosol, nucleus, plastid	97.06	97.06
Solyc05g054550.2.1	Tomato	cytosol, nucleus, plastid	94.71	94.71
Solyc04g011430.2.1	Tomato	cytosol	86.47	89.09
VIT_13s0019g00910.t01	Wine grape	plastid	86.47	87.5
CDX76101	Canola	cytosol, nucleus, plastid	85.29	86.83
CDY02931	Canola	cytosol, nucleus, plastid	85.29	86.83
GSMUA_Achr6P34220_001	Banana	plastid	85.29	86.31
Bra014751.1-P	Field mustard	cytosol, nucleus, plastid	84.71	86.23
Bra003210.1-P	Field mustard	nucleus	83.53	85.03
CDY62383	Canola	nucleus	83.53	85.03
CDY53695	Canola	nucleus	83.53	85.03
TraesCS3A01G357700.1	Wheat	cytosol, nucleus, plastid	82.35	82.84
TraesCS3D01G351600.1	Wheat	cytosol, nucleus, plastid	82.35	82.84
TraesCS3B01G390400.1	Wheat	cytosol, nucleus, plastid	82.35	82.84
Bra007157.1-P	Field mustard	nucleus	81.18	82.63
CDY40214	Canola	nucleus	81.18	82.63
CDY41239	Canola	nucleus	80.59	82.04
Os01t0839700-01	Rice	cytosol, nucleus, plastid	81.18	81.66
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	80.59	81.55
Solyc09g009720.1.1	Tomato	nucleus	80.0	81.44
Zm00001d038376_P001	Maize	extracellular	80.59	81.07
Os05t0460200-01	Rice	cytosol, nucleus, plastid	80.0	80.47
EES03856	Sorghum	cytosol, nucleus, plastid	80.0	80.47
Zm00001d012421_P003	Maize	cytosol, nucleus, plastid	79.41	79.88
Zm00001d042929_P001	Maize	cytosol, nucleus, plastid	78.82	79.29
TraesCS1D01G284200.1	Wheat	cytosol, nucleus, plastid	78.82	79.29
TraesCS1A01G285200.1	Wheat	cytosol, nucleus, plastid	78.82	79.29
HORVU1Hr1G072200.2	Barley	cytosol	78.24	78.7
KXG22164	Sorghum	cytosol, nucleus, plastid	72.94	72.09
GSMUA_Achr5P08370_001	Banana	cytosol	57.06	71.32
AT3G55380.2	Thale cress	nucleus	82.94	70.15
TraesCS1B01G294400.2	Wheat	plastid	78.82	67.0
Zm00001d010534_P001	Maize	cytosol	80.0	57.38
GSMUA_Achr5P08330_001	Banana	extracellular, golgi, vacuole	31.18	55.79
HORVU3Hr1G086540.2	Barley	endoplasmic reticulum, golgi, plastid	82.35	55.34
Zm00001d040631_P001	Maize	cytosol	58.24	43.61
Solyc03g112720.2.1	Tomato	nucleus	28.82	32.89
Solyc02g093110.2.1	Tomato	nucleus	30.59	32.5
Solyc12g088680.1.1	Tomato	cytosol	30.0	31.88
Solyc03g044260.2.1	Tomato	nucleus	29.41	31.25
Solyc04g078620.2.1	Tomato	nucleus	29.41	31.25
Solyc11g065190.1.1	Tomato	plastid	31.76	29.83
Solyc07g021660.1.1	Tomato	extracellular	22.35	27.54
Solyc07g021670.1.1	Tomato	cytosol, mitochondrion	7.65	21.67
Zm00001d008383_P001	Maize	plastid	26.47	19.57
Zm00001d009034_P002	Maize	nucleus	41.76	18.35
Zm00001d029705_P032	Maize	plasma membrane	28.82	9.01
Zm00001d005779_P153	Maize	plasma membrane	18.82	5.33

Protein Annotations

MapMan:19.2.2.1.6.1.1	MapMan:19.2.4.1.2	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0000209	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0061630
InterPro:IPR000608	InterPro:IPR016135	UniProt:K4C2D2	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127
PANTHER:PTHR24067	PANTHER:PTHR24067:SF237	SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc05g054540.2	EnsemblPlants:Solyc05g054540.2.1
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002766AEC	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:64439945..64443612

Molecular Weight (calculated)

18878.2 Da

IEP (calculated)

4.809

GRAVY (calculated)

-0.433

Length

170 amino acids

Sequence
(BLAST)

001: MASASPSQAS LILQKPAQNL CKKPVDGFSA GLVDESNLFE WSVTIIGPPE TLYEGGFFNA IMSFPQNYPN SPPTVKFTSE VWHPNVYSDG KVCISILHPP
101: GDDPNGYELA SERWSPVHTV ESIMLSIISM LSSPNDESPA NVEAAKEWRD NRDEFKKKVS RCVRRSQEMT

Best Arabidopsis Sequence Match ( AT5G59300.1 )
(BLAST)

001: MASQASLLLQ KQLKDLCKHP VDGFSAGLVD EKNIFEWSVT IIGPPDTLYE GGFFNAIMTF PQNYPNSPPT VRFTSDMWHP NVYSDGRVCI SILHPPGDDP
101: SGYELASERW TPVHTVESIM LSIISMLSGP NDESPANVEA AKEWRDKRDE FKKKVSRCVR KSQEMF

Arabidopsis Description

UBC7Ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:Q42540]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.