Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 5
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089754 | Potato | nucleus | 33.33 | 75.41 |
| Solyc02g093110.2.1 | Tomato | nucleus | 53.62 | 46.25 |
| Solyc04g078620.2.1 | Tomato | nucleus | 53.62 | 46.25 |
| Solyc12g088680.1.1 | Tomato | cytosol | 53.62 | 46.25 |
| Solyc03g044260.2.1 | Tomato | nucleus | 52.9 | 45.62 |
| Solyc03g112720.2.1 | Tomato | nucleus | 44.2 | 40.94 |
| CDX73361 | Canola | extracellular | 26.81 | 40.22 |
| Solyc04g011430.2.1 | Tomato | cytosol | 26.81 | 22.42 |
| Solyc05g054540.2.1 | Tomato | plastid | 27.54 | 22.35 |
| Solyc11g065190.1.1 | Tomato | plastid | 28.99 | 22.1 |
| Solyc09g009720.1.1 | Tomato | nucleus | 25.36 | 20.96 |
| Solyc05g054550.2.1 | Tomato | cytosol, nucleus, plastid | 25.36 | 20.59 |
| Solyc07g021670.1.1 | Tomato | cytosol, mitochondrion | 2.9 | 6.67 |
Protein Annotations
| MapMan:19.2.2.2.3 | Gene3D:3.10.110.10 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016925 |
| GO:GO:0019538 | GO:GO:0019789 | InterPro:IPR000608 | InterPro:IPR016135 | UniProt:K4CD22 | PFAM:PF00179 |
| ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43927 | PANTHER:PTHR43927:SF4 | SMART:SM00212 | SUPFAM:SSF54495 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc07g021660.1 | EnsemblPlants:Solyc07g021660.1.1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD |
| UniParc:UPI000276C9E8 | InterPro:Ubc9 | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:20896349..20897374
Molecular Weight (calculated)
16270.5 Da
IEP (calculated)
5.571
GRAVY (calculated)
-0.240
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFIVLILYS ILLNVLNSDM LYLTDMVQSD WEGGYYPMTI HFSENYPFMP PKCKFPQGFF HPNVYPSGKV CLQSLFNQGH GWSPTITVKE ILIAIPYLLD
101: WPSPNYKAQT DSYNMYIQDN AEYRRRVRQQ AEQYPAFF
101: WPSPNYKAQT DSYNMYIQDN AEYRRRVRQQ AEQYPAFF
001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV
Arabidopsis Description
SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.