Factsheet for Solyc12g088680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g072580.1.1
Solyc05g052960.2.1
Solyc07g045160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57870.1	Solyc05g052960.2.1	AT2G39760.1	21798944
AT3G57870.1	Solyc04g072580.1.1	AT5G56630.1	21798944
AT3G57870.1	Solyc07g045160.2.1	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039840	Potato	mitochondrion	95.0	95.0
Solyc04g078620.2.1	Tomato	nucleus	87.5	87.5
Bra014602.1-P	Field mustard	cytosol	85.62	85.62
CDX88967	Canola	cytosol	85.62	85.62
CDY47661	Canola	cytosol	85.62	85.62
KRH77039	Soybean	cytosol	85.0	85.53
KRH28435	Soybean	cytosol	85.0	85.53
Bra003301.1-P	Field mustard	cytosol	85.0	85.0
KRH57897	Soybean	nucleus	85.0	85.0
KRH04554	Soybean	nucleus	85.0	85.0
CDX98253	Canola	cytosol	85.0	85.0
CDX67711	Canola	cytosol	85.0	85.0
AT3G57870.1	Thale cress	cytosol	85.0	85.0
Bra007363.1-P	Field mustard	cytosol	84.38	84.38
Solyc03g044260.2.1	Tomato	nucleus	84.38	84.38
CDY70581	Canola	cytosol	83.75	83.75
CDX71988	Canola	nucleus	83.75	83.75
Solyc02g093110.2.1	Tomato	nucleus	82.5	82.5
Solyc03g112720.2.1	Tomato	nucleus	68.75	73.83
Solyc07g021670.1.1	Tomato	cytosol, mitochondrion	24.38	65.0
Solyc07g021660.1.1	Tomato	extracellular	46.25	53.62
Solyc09g009720.1.1	Tomato	nucleus	33.12	31.74
Solyc04g011430.2.1	Tomato	cytosol	32.5	31.52
Solyc11g065190.1.1	Tomato	plastid	35.62	31.49
Solyc05g054540.2.1	Tomato	plastid	31.88	30.0
Solyc05g054550.2.1	Tomato	cytosol, nucleus, plastid	30.62	28.82

Protein Annotations

MapMan:19.2.2.2.3	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016925
GO:GO:0019538	GO:GO:0019789	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4DGT9	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43927	PANTHER:PTHR43927:SF4	SMART:SM00212	SUPFAM:SSF54495
EnsemblPlantsGene:Solyc12g088680.1	EnsemblPlants:Solyc12g088680.1.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002769453
InterPro:Ubc9	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:63963619..63965748

Molecular Weight (calculated)

18043.4 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.671

Length

160 amino acids

Sequence
(BLAST)

001: MADGIARGRL TEERKSWRKN HPHGFVARPE TGADGSVNLM VWHCSIPGKA KTDWEGGFYP ITMYFSEDFP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DSGWRPAITV KQILVGIQDL LDQPNPSDPA QTEGYQLYMQ DGAEYKKRVR QQAKQYPAPV

Best Arabidopsis Sequence Match ( AT3G57870.1 )
(BLAST)

001: MASGIARGRL AEERKSWRKN HPHGFVAKPE TGQDGTVNLM VWHCTIPGKA GTDWEGGFFP LTMHFSEDYP SKPPKCKFPQ GFFHPNVYPS GTVCLSILNE
101: DYGWRPAITV KQILVGIQDL LDTPNPADPA QTDGYHLFCQ DPVEYKKRVK LQSKQYPALV

Arabidopsis Description

SCE1SCE1A [Source:UniProtKB/TrEMBL;Acc:A0A178V9H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.