Factsheet for Solyc05g052960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009060.2.1
Solyc01g010820.2.1
Solyc01g090460.2.1
Solyc02g068750.1.1
Solyc02g093510.2.1
Solyc03g112520.2.1
Solyc03g116760.2.1
Solyc05g052960.2.1
Solyc06g073990.1.1
Solyc09g076050.2.1
Solyc09g082580.2.1
Solyc09g097910.2.1
Solyc11g072070.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39760.1	Solyc01g010820.2.1	AT1G26830.1	15618422
AT2G39760.1	Solyc01g010820.2.1	AT1G26830.1	15659098
AT2G39760.1	Solyc01g010820.2.1	AT1G26830.1	15772280
AT2G39760.1	Solyc03g116760.2.1	AT1G52540.1	21798944
AT2G39760.1	Solyc01g010820.2.1	AT1G69670.1	15618422
AT2G39760.1	Solyc01g010820.2.1	AT1G69670.1	15659098
AT2G39760.1	Solyc05g052960.2.1	AT2G39760.1	15618422
AT2G39760.1	Solyc05g052960.2.1	AT2G39760.1	21798944
AT2G39760.1	Solyc09g097910.2.1	AT3G23700.1	21798944
AT2G39760.1	Solyc01g009060.2.1	AT3G43700.1	15618422
AT2G39760.1	Solyc11g072070.1.1	AT3G43700.1	15618422
AT2G39760.1	Solyc03g112520.2.1	AT3G54170.1	21798944
AT2G39760.1	Solyc01g090460.2.1	AT3G60390.1	21798944
AT2G39760.1	Solyc09g082580.2.1	AT4G14740.1	21798944
AT2G39760.1	Solyc09g076050.2.1	AT4G14900.1	21798944
AT2G39760.1	Solyc02g068750.1.1	AT4G22720.1	21798944
AT2G39760.1	Solyc06g073990.1.1	AT5G06270.1	21798944
AT2G39760.1	Solyc02g093510.2.1	AT5G14440.1	21798944
AT2G39760.1	Solyc01g009060.2.1	AT5G21010.1	15618422
AT2G39760.1	Solyc11g072070.1.1	AT5G21010.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069942	Potato	cytosol	98.04	98.04
VIT_13s0019g02260.t01	Wine grape	cytosol	76.96	77.34
GSMUA_Achr7P10650_001	Banana	cytosol	68.87	69.38
KRH31032	Soybean	nucleus	69.36	68.19
KRG97837	Soybean	cytosol	68.87	67.87
CDX93238	Canola	cytosol	64.95	66.92
Bra017053.1-P	Field mustard	cytosol	64.71	66.17
CDY07031	Canola	cytosol	64.71	66.17
Bra000147.1-P	Field mustard	cytosol	61.76	65.97
AT2G39760.1	Thale cress	cytosol	65.2	65.2
CDY07638	Canola	cytosol	62.99	64.25
TraesCS2A01G255800.1	Wheat	cytosol	62.01	63.89
TraesCS2D01G266900.1	Wheat	cytosol	61.76	63.64
Os07t0101400-01	Rice	cytosol	60.78	62.78
EER97813	Sorghum	plastid	60.29	61.19
CDY61778	Canola	cytosol	62.75	60.66
GSMUA_Achr10P...	Banana	cytosol	27.45	59.26
Solyc09g072980.2.1	Tomato	cytosol	59.31	58.74
HORVU2Hr1G064920.1	Barley	plastid	61.03	57.91
Solyc01g009060.2.1	Tomato	cytosol	56.37	56.79
Solyc01g080250.2.1	Tomato	plastid	54.66	54.79
Solyc11g072070.1.1	Tomato	cytosol	54.66	54.66
Zm00001d007888_P002	Maize	plastid	54.66	51.86
CDX93236	Canola	cytosol	40.44	40.44

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006950	GO:GO:0006970
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0031396
GO:GO:0042802	GO:GO:0071472	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	UniProt:K4C1X6
InterPro:MATH/TRAF_dom	PFAM:PF00651	PFAM:PF00917	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411
PANTHER:PTHR24411:SF54	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695
EnsemblPlantsGene:Solyc05g052960.2	EnsemblPlants:Solyc05g052960.2.1	InterPro:TRAF-like	UniParc:UPI00027660E5	SEG:seg	:

Description

BTB/POZ and MATH domain-containing protein 3 [Source:Projected from Arabidopsis thaliana (AT2G39760) UniProtKB/Swiss-Prot;Acc:O22286]

Coordinates

chr5:-:63130596..63136156

Molecular Weight (calculated)

45104.8 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.188

Length

408 amino acids

Sequence
(BLAST)

001: MNQISVDRAG KDSSSKSVNE TVNGSHHFTI RGYSLAKGMG PGKYISSDIF TVGGYDWAIY FYPDGKNIED SSMYVSVFIA LASEGTDVRA LFELTMLDQS
101: GKVKHKVHSH FDRALESGPY TLKYRGSMWG YKRFFRRASL ETSDYLKDDC LSMHCTVGVV RTRVEGPKNY SVTIPPSDMG QSLKYLLDAE LGCDIVFRVG
201: EEAFKGHKLI LAARSPVFRA QFFGLIGNPK TDEVEIEDIE PSVFKAMLQY IYSDELPDLI EITGSTSTCT STIVTQHLLA AADRFGVDRL KELCEAKLCE
301: EVNVDTVATT LSLAEQHRCP QLKAICLKFA ATNLGVVMQK DGFKHLEESC PLLLSELLET VASVDEKPSL TSSKKRNSSS SIFGLDLAAD GAAADSVNLT
401: ARRVRRRM

Best Arabidopsis Sequence Match ( AT2G39760.1 )
(BLAST)

001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS

Arabidopsis Description

BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.