Factsheet for Solyc11g072070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1
Solyc05g052960.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	Solyc01g010820.2.1	AT1G26830.1	15772280
AT3G43700.1	Solyc05g052960.2.1	AT2G39760.1	15618422
AT5G21010.1	Solyc05g052960.2.1	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070468	Potato	cytosol	97.3	97.3
KXG25976	Sorghum	cytosol	25.98	87.6
Solyc01g009060.2.1	Tomato	cytosol	82.6	83.21
VIT_06s0009g01030.t01	Wine grape	cytosol	76.47	73.76
GSMUA_Achr7P27230_001	Banana	cytosol	70.83	73.54
GSMUA_Achr5P08970_001	Banana	cytosol	71.32	72.39
KRH73429	Soybean	cytosol, plastid	69.61	71.72
KRH14738	Soybean	cytosol	68.87	70.96
HORVU5Hr1G104190.1	Barley	cytosol	70.1	70.79
GSMUA_Achr4P14800_001	Banana	cytosol	68.14	70.74
TraesCS2D01G246900.1	Wheat	cytosol, plastid	73.28	70.19
TraesCS2B01G262200.1	Wheat	cytosol	73.28	70.19
TraesCS2A01G237800.1	Wheat	cytosol	73.04	69.95
Os07t0167200-01	Rice	cytosol	71.81	69.1
Zm00001d013094_P001	Maize	cytosol	70.83	67.52
Zm00001d034400_P003	Maize	cytosol	70.34	67.06
Zm00001d018887_P002	Maize	cytosol	70.83	66.9
EER90755	Sorghum	cytosol	70.1	66.67
TraesCS5B01G431400.2	Wheat	cytosol	70.59	65.9
TraesCS5A01G429400.2	Wheat	cytosol	70.59	65.9
KXG34465	Sorghum	cytosol	70.83	65.53
AT5G21010.1	Thale cress	cytosol	65.69	65.37
HORVU2Hr1G055140.1	Barley	cytosol	73.28	65.14
CDX70957	Canola	plastid	65.2	64.88
CDX88828	Canola	plastid	64.95	64.63
Bra006591.1-P	Field mustard	plastid	64.95	64.63
AT3G43700.1	Thale cress	plastid	64.22	63.13
TraesCS5D01G437400.1	Wheat	cytosol	71.08	62.91
Bra020142.1-P	Field mustard	plastid	62.75	61.69
CDY09093	Canola	cytosol, plastid	54.66	60.76
CDY71585	Canola	cytosol	29.66	59.9
Solyc09g072980.2.1	Tomato	cytosol	57.35	56.8
CDY16586	Canola	cytosol	24.02	56.32
Solyc01g080250.2.1	Tomato	plastid	55.64	55.77
Solyc05g052960.2.1	Tomato	cytosol	54.66	54.66

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974
UniProt:K4DAR4	InterPro:MATH/TRAF_dom	PFAM:PF00651	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411
PANTHER:PTHR24411:SF53	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695
EnsemblPlantsGene:Solyc11g072070.1	EnsemblPlants:Solyc11g072070.1.1	InterPro:TRAF-like	UniParc:UPI0002769B0E	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:55345601..55353197

Molecular Weight (calculated)

44914.1 Da

IEP (calculated)

5.932

GRAVY (calculated)

-0.205

Length

408 amino acids

Sequence
(BLAST)

001: MSELPTITHV SDTIAVGELA PPTSSRSVTD TVNGSHHFVI SGYSLAKGMG VGKHIASDTF TVGGHQWAIY FYPDGKNPED NSAYVSVFIA LASEGTDVRA
101: LFELTLIDQS GKEKHKVHSH FDRSLESGPY TLKYRGSMWG YKRFFRRALL ETSEYLKDDC LKINCTVGVV RSTIECSSLH TIQVPDSDMG THFGMLLENM
201: EASDVIFNVS GEMFHAHKLV LAARSPVFHT EFLCGHEGDA QEIVVNDMEP KVFKAMLHFI YKDALVEEEL EATRTSTTPC ISDTLTAKLL SAADRYDLTR
301: LRRLCESHLC KDISINSVAQ ILALADRYHA AELKSVCLSF AAENLSAVMQ SDGFEYLKEN CPALQSELLK TVAGCEDDSS SGGGKSKSVW AQLSDGGDTN
401: GRRIRQKT

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.