Factsheet for Solyc01g009060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1
Solyc05g052960.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	Solyc01g010820.2.1	AT1G26830.1	15772280
AT3G43700.1	Solyc05g052960.2.1	AT2G39760.1	15618422
AT5G21010.1	Solyc05g052960.2.1	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058456	Potato	cytosol	98.02	98.02
KXG25976	Sorghum	cytosol	26.17	87.6
Solyc11g072070.1.1	Tomato	cytosol	83.21	82.6
VIT_06s0009g01030.t01	Wine grape	cytosol	79.51	76.12
GSMUA_Achr7P27230_001	Banana	cytosol	73.09	75.32
GSMUA_Achr5P08970_001	Banana	cytosol	72.84	73.38
GSMUA_Achr4P14800_001	Banana	cytosol	69.63	71.76
KRH73429	Soybean	cytosol, plastid	70.12	71.72
TraesCS2D01G246900.1	Wheat	cytosol, plastid	74.81	71.13
TraesCS2B01G262200.1	Wheat	cytosol	74.81	71.13
Os07t0167200-01	Rice	cytosol	74.32	70.99
KRH14738	Soybean	cytosol	69.38	70.96
TraesCS2A01G237800.1	Wheat	cytosol	74.57	70.89
HORVU5Hr1G104190.1	Barley	cytosol	70.62	70.79
Zm00001d013094_P001	Maize	cytosol	73.58	69.63
Zm00001d034400_P003	Maize	cytosol	73.09	69.16
EER90755	Sorghum	cytosol	73.09	69.0
Zm00001d018887_P002	Maize	cytosol	72.84	68.29
KXG34465	Sorghum	cytosol	73.58	67.57
HORVU2Hr1G055140.1	Barley	cytosol	74.57	65.8
TraesCS5A01G429400.2	Wheat	cytosol	70.86	65.68
TraesCS5B01G431400.2	Wheat	cytosol	70.62	65.45
CDX70957	Canola	plastid	64.69	63.9
CDX88828	Canola	plastid	64.44	63.66
AT5G21010.1	Thale cress	cytosol	64.44	63.66
Bra006591.1-P	Field mustard	plastid	64.44	63.66
AT3G43700.1	Thale cress	plastid	64.69	63.13
TraesCS5D01G437400.1	Wheat	cytosol	71.36	62.69
Bra020142.1-P	Field mustard	plastid	61.73	60.24
CDY09093	Canola	cytosol, plastid	53.83	59.4
CDY71585	Canola	cytosol	29.38	58.91
Solyc09g072980.2.1	Tomato	cytosol	58.52	57.52
Solyc05g052960.2.1	Tomato	cytosol	56.79	56.37
Solyc01g080250.2.1	Tomato	plastid	56.54	56.27
CDY16586	Canola	cytosol	23.7	55.17

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974
UniProt:K4ATA2	InterPro:MATH/TRAF_dom	PFAM:PF00651	PFAM:PF00917	PFscan:PS50097	PFscan:PS50144
PANTHER:PTHR24411	PANTHER:PTHR24411:SF52	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599
SUPFAM:SSF54695	EnsemblPlantsGene:Solyc01g009060.2	EnsemblPlants:Solyc01g009060.2.1	InterPro:TRAF-like	UniParc:UPI0002763333	SEG:seg

Description

No Description!

Coordinates

chr1:+:3067813..3074739

Molecular Weight (calculated)

44965.2 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.290

Length

405 amino acids

Sequence
(BLAST)

001: MSEQPIITHV SDTSPLTRAT SSRSVTETVN GSHRFVIQGY SLAKGMGVGK HIASDTFTVG GHQWAIYFYP DGKNPEDNST YVSLFIALAS EGTDVRALFE
101: LTLVDQSGKE KHKVHSHFDR SLESGPYTLK YRGSMWGYKR FFRRALLENS DYLKDDCLKI NCTVGVVRST IDIASLQPIQ VPGSDMGSHF GMLLENMEGT
201: DVVFSVAGEK FHAHKLVLTA RSPVFRTELF DELMGDKQEI VVTDMEPRVF KAMLHFIYRD SLVDEEIEDT SSSSIPSVTD TLTAKLLAAA DRYELTRLRR
301: VCESHLCKDI SVNSVSRTLA LADRYHATEL KAVCLRFAAE NLAAVMQSDG FEYLKENCPS LQSELLKTVA GCEDDCSSGG GKSRSVWAQL SDGGDTNGRR
401: VRHRT

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.