Factsheet for PGSC0003DMT400058456

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016765
PGSC0003DMT400069942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43700.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT3G43700.1	PGSC0003DMT400069942	AT2G39760.1	15618422
AT5G21010.1	PGSC0003DMT400069942	AT2G39760.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009060.2.1	Tomato	cytosol	98.02	98.02
KXG25976	Sorghum	cytosol	26.17	87.6
PGSC0003DMT400070468	Potato	cytosol	83.7	83.09
VIT_06s0009g01030.t01	Wine grape	cytosol	80.49	77.07
GSMUA_Achr7P27230_001	Banana	cytosol	73.09	75.32
GSMUA_Achr5P08970_001	Banana	cytosol	73.09	73.63
KRH73429	Soybean	cytosol, plastid	70.86	72.47
GSMUA_Achr4P14800_001	Banana	cytosol	69.63	71.76
TraesCS2D01G246900.1	Wheat	cytosol, plastid	75.31	71.6
TraesCS2B01G262200.1	Wheat	cytosol	75.31	71.6
KRH14738	Soybean	cytosol	69.88	71.46
TraesCS2A01G237800.1	Wheat	cytosol	75.06	71.36
Os07t0167200-01	Rice	cytosol	74.57	71.23
HORVU5Hr1G104190.1	Barley	cytosol	70.37	70.54
Zm00001d013094_P001	Maize	cytosol	73.09	69.16
Zm00001d034400_P003	Maize	cytosol	72.59	68.69
EER90755	Sorghum	cytosol	72.59	68.53
Zm00001d018887_P002	Maize	cytosol	73.09	68.52
KXG34465	Sorghum	cytosol	73.83	67.8
HORVU2Hr1G055140.1	Barley	cytosol	75.06	66.23
TraesCS5A01G429400.2	Wheat	cytosol	70.62	65.45
TraesCS5B01G431400.2	Wheat	cytosol	70.37	65.22
AT5G21010.1	Thale cress	cytosol	65.68	64.88
CDX70957	Canola	plastid	65.68	64.88
CDX88828	Canola	plastid	65.43	64.63
Bra006591.1-P	Field mustard	plastid	65.43	64.63
AT3G43700.1	Thale cress	plastid	65.43	63.86
TraesCS5D01G437400.1	Wheat	cytosol	71.11	62.47
Bra020142.1-P	Field mustard	plastid	62.72	61.2
CDY09093	Canola	cytosol, plastid	54.81	60.49
CDY71585	Canola	cytosol	29.63	59.41
PGSC0003DMT400009802	Potato	plastid	57.04	56.62
PGSC0003DMT400069942	Potato	cytosol	56.79	56.37
PGSC0003DMT400011115	Potato	plastid	56.3	56.02
CDY16586	Canola	cytosol	23.95	55.75

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:102599562	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083
InterPro:IPR008974	UniProt:M1C2N8	InterPro:MATH/TRAF_dom	PFAM:PF00651	EnsemblPlantsGene:PGSC0003DMG400022701	PGSC:PGSC0003DMG400022701
EnsemblPlants:PGSC0003DMT400058456	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF52	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI000294E6B7
RefSeq:XP_006362728.1	SEG:seg	:	:	:	:

Description

BTB-POZ and MATH domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022701]

Coordinates

chr1:+:5497761..5505712

Molecular Weight (calculated)

44977.2 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.291

Length

405 amino acids

Sequence
(BLAST)

001: MSEQPIITHV SDTSPLTRAT SSRSVTETVN GSHRFVIQGY SLAKGMGVGK HIASDNFTVG GHQWAIYFYP DGKNPEDNST YVSLFIALAS EGTDVRALFE
101: LTLVDQSGKG KHKVHSHFDR SLESGPYTLK YRGSMWGYKR FFRRALLENS DYLKDDCLKI NCTVGVVRST IDISSLQPIQ VPDSDMGSHF GMLLENMEGS
201: DVVFIVAGEK FHAHKLVLTA RSPVFRTELF DELMGDKQEI VVTDMEPRVF KAMLHFIYRD SLVDEEIEDT SSSSIPSVTN TLTAKLLAAA DRYDLTRLRR
301: VCESHLCKDI SVNSVSRTLA LADRYHATEL KAVCLRFAAE NLAAVMQSDG FEYLKENCPS LQSELLKTVA GCEDDCSSGG GKSRSVWAQL SDGGDTNGRR
401: VRHRT

Best Arabidopsis Sequence Match ( AT3G03740.1 )
(BLAST)

001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED

Arabidopsis Description

BPM4BTB/POZ and MATH domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.