Factsheet for PGSC0003DMT400009802

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g072980.2.1	Tomato	cytosol	98.77	97.82
VIT_07s0104g00570.t01	Wine grape	cytosol	83.09	84.33
KRG95474	Soybean	plastid	80.15	79.76
KRH71465	Soybean	plastid	78.68	77.91
KRH31976	Soybean	plastid	78.68	77.72
KRH67156	Soybean	plastid	77.94	77.56
HORVU2Hr1G023850.1	Barley	cytosol, plastid	71.08	73.98
GSMUA_Achr6P16160_001	Banana	plastid	75.25	73.62
GSMUA_Achr6P23740_001	Banana	plastid	72.55	71.15
Zm00001d022366_P001	Maize	plastid	73.53	71.09
PGSC0003DMT400011115	Potato	plastid	70.59	70.76
Zm00001d007068_P001	Maize	plastid	73.53	70.42
EER99824	Sorghum	plastid	73.53	70.42
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	71.81	68.94
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	71.81	68.94
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	71.57	68.71
Os07t0655300-01	Rice	plastid	72.79	68.43
PGSC0003DMT400069942	Potato	cytosol	59.07	59.07
PGSC0003DMT400058456	Potato	cytosol	56.62	57.04
PGSC0003DMT400070468	Potato	cytosol	56.62	56.62

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002083
InterPro:IPR008974	UniProt:M0ZWY6	InterPro:MATH/TRAF_dom	PFAM:PF00651	EnsemblPlantsGene:PGSC0003DMG400003837	PGSC:PGSC0003DMG400003837
EnsemblPlants:PGSC0003DMT400009802	PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf
SMART:SM00061	SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI000295D34B
SEG:seg	:	:	:	:	:

Description

Speckle-type POZ protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003837]

Coordinates

chr9:-:51034039..51040084

Molecular Weight (calculated)

45237.8 Da

IEP (calculated)

6.452

GRAVY (calculated)

-0.181

Length

408 amino acids

Sequence
(BLAST)

001: MGRVETEAIA KPSSSSSSSS SSAVTTSTSV TETVNGSHDF KINGYSLSKG IGIGKYITSD TFMVGGYTWA IYFYPDGKST EDNSTYVSLF IALASEGTDV
101: RALFELTLID QSGKSRHKVH SHFGRALESG PYTLKYRGSM WGYKRFFKRT ALESSDYLKD DCLQVHCCVG VVRSHTEGPK TYSIPLSPSD IGLHFGQLLE
201: SGKDTDVNFD VNGEVFAAHK LILAARSPVF RAQLFGPMKD QNTEHIKVED MEAPIFKALI HFMYWDVLPD MEELTGLNTK WASTLMSQHL LAAADCYGLD
301: RLRLLCEANL CEEVAINTVA TTLALAEQHH CFQLKSVCLK FVAMPENLRA VMQTDGFDYL RESCPHVLTE LLEYVARVNE HSSITNKLGN GLVLDGGDFN
401: GRRVKQRL

Best Arabidopsis Sequence Match ( AT3G06190.1 )
(BLAST)

001: MDTIRVSKEV PGSSKSTAQS LTESTSRTET INGSHEFKIS GYSLVKGMGI GKYVASDTFM VGGYSWAIYF YPDGKSPEDN SVYVSLFIAL ASEGADVRAL
101: FELTLVDQSG NERHKVHSHF GRTLESGPYT LKYRGSMWGY KRFFKRSLLE SSDYLKDNGL LVRCCVGVVK SRTEGPRCYN IPVPVSGLGQ QFGKLLESGK
201: GADVTFEVDG ETFPAHKLVL AARSAVFRAQ LFGPLRSENT NCIIIEDVQA PIFKMLLHFI YWDEMPDMQD LIGTDLKWAS TLVAQHLLAA ADRYALERLR
301: TICESKLCEG ISINTVATTL ALAEQHHCFQ LKAACLKFIA LPENLKAVME TDGFDYLKES CPSLLSELLE YVARLSEHSL TSSGHRKELF ADGCDLNGRR
401: VKQRLH

Arabidopsis Description

BPM2BTB/POZ and MATH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.