Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G306600.1 | |
| TraesCS6B01G335200.1 | |
| TraesCS6D01G285800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G06190.1 | TraesCS6A01G306600.1 | AT1G26830.1 | 15772280 |
| AT3G06190.1 | TraesCS6B01G335200.1 | AT1G26830.1 | 15772280 |
| AT3G06190.1 | TraesCS6D01G285800.1 | AT1G26830.1 | 15772280 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G159700.1 | Wheat | mitochondrion, plastid | 99.06 | 99.06 |
| TraesCS2D01G138300.1 | Wheat | mitochondrion, plastid | 99.06 | 99.06 |
| HORVU2Hr1G023850.1 | Barley | cytosol, plastid | 91.06 | 98.72 |
| Zm00001d022366_P001 | Maize | plastid | 86.35 | 86.97 |
| EER99824 | Sorghum | plastid | 87.06 | 86.85 |
| Os07t0655300-01 | Rice | plastid | 88.0 | 86.18 |
| Zm00001d007068_P001 | Maize | plastid | 86.12 | 85.92 |
| VIT_07s0104g00570.t01 | Wine grape | cytosol | 70.82 | 74.88 |
| GSMUA_Achr6P23740_001 | Banana | plastid | 73.18 | 74.76 |
| GSMUA_Achr6P16160_001 | Banana | plastid | 72.94 | 74.34 |
| VIT_05s0020g02520.t01 | Wine grape | plastid | 70.12 | 73.04 |
| Solyc09g072980.2.1 | Tomato | cytosol | 70.12 | 72.33 |
| PGSC0003DMT400009802 | Potato | plastid | 68.94 | 71.81 |
| KRG95474 | Soybean | plastid | 68.71 | 71.22 |
| KRH31976 | Soybean | plastid | 69.18 | 71.19 |
| KRH71465 | Soybean | plastid | 68.94 | 71.12 |
| KRH67156 | Soybean | plastid | 68.0 | 70.49 |
| CDY58342 | Canola | cytosol | 64.47 | 67.99 |
| CDY66705 | Canola | cytosol | 64.47 | 67.99 |
| Bra001186.1-P | Field mustard | cytosol | 64.47 | 67.99 |
| Bra040233.1-P | Field mustard | cytosol | 62.12 | 67.87 |
| CDY08064 | Canola | cytosol | 64.47 | 67.32 |
| Bra020764.1-P | Field mustard | cytosol | 60.94 | 67.27 |
| Bra002200.1-P | Field mustard | cytosol | 63.29 | 67.25 |
| AT3G06190.1 | Thale cress | cytosol | 64.24 | 67.24 |
| CDY05245 | Canola | cytosol | 62.59 | 67.17 |
| CDY24708 | Canola | cytosol | 63.53 | 67.0 |
| Bra006489.1-P | Field mustard | cytosol | 63.53 | 67.0 |
| PGSC0003DMT400011115 | Potato | plastid | 63.06 | 65.85 |
| Solyc01g080250.2.1 | Tomato | plastid | 63.06 | 65.85 |
| AT5G19000.2 | Thale cress | plastid | 66.35 | 63.8 |
| CDX70860 | Canola | cytosol | 63.76 | 61.59 |
| CDY18844 | Canola | cytosol | 62.12 | 61.54 |
| CDY13941 | Canola | cytosol | 63.53 | 61.5 |
| CDX92567 | Canola | cytosol | 63.29 | 61.28 |
| CDY02591 | Canola | cytosol | 56.71 | 60.25 |
| TraesCS2A01G255800.1 | Wheat | cytosol | 51.76 | 55.56 |
| TraesCS2A01G237800.1 | Wheat | cytosol | 54.59 | 54.46 |
| TraesCS5A01G429400.2 | Wheat | cytosol | 53.65 | 52.17 |
| TraesCS5A01G462000.1 | Wheat | cytosol | 18.59 | 45.14 |
| TraesCS1A01G101100.1 | Wheat | mitochondrion, plastid | 36.0 | 43.97 |
| TraesCS5A01G452100.1 | Wheat | cytosol | 13.41 | 43.85 |
| TraesCS7A01G026200.1 | Wheat | mitochondrion | 33.18 | 43.38 |
| TraesCS5A01G528500.1 | Wheat | cytosol | 32.24 | 43.22 |
| TraesCS7A01G311400.1 | Wheat | cytosol | 18.12 | 42.31 |
| TraesCS7A01G511200.1 | Wheat | cytosol | 15.06 | 41.29 |
| TraesCS5A01G451900.1 | Wheat | cytosol | 34.59 | 40.95 |
| TraesCS4A01G462500.1 | Wheat | mitochondrion | 34.12 | 40.73 |
| TraesCS2A01G508000.1 | Wheat | cytosol | 13.41 | 40.71 |
| TraesCS4A01G465200.1 | Wheat | cytosol | 32.24 | 40.65 |
| TraesCS4A01G465700.1 | Wheat | cytosol | 34.12 | 40.5 |
| TraesCS5A01G451500.1 | Wheat | cytosol | 34.59 | 40.5 |
| TraesCS2A01G472700.1 | Wheat | cytosol | 34.59 | 40.38 |
| TraesCS3A01G019700.1 | Wheat | cytosol | 34.35 | 40.33 |
| TraesCS2A01G543300.1 | Wheat | cytosol | 31.76 | 40.3 |
| TraesCS3A01G020800.1 | Wheat | cytosol | 33.65 | 40.17 |
| TraesCS3A01G320300.1 | Wheat | cytosol | 33.41 | 40.0 |
| TraesCS5A01G528600.1 | Wheat | cytosol | 33.41 | 39.89 |
| TraesCS5A01G554900.1 | Wheat | cytosol | 33.65 | 39.83 |
| TraesCS5A01G040900.1 | Wheat | cytosol | 20.94 | 39.56 |
| TraesCS2A01G470000.1 | Wheat | plastid | 33.18 | 39.5 |
| TraesCS3A01G020200.1 | Wheat | cytosol | 33.18 | 39.39 |
| TraesCS4A01G193000.1 | Wheat | cytosol | 33.41 | 39.23 |
| TraesCS2A01G472600.1 | Wheat | cytosol | 31.29 | 39.12 |
| TraesCS2A01G471000.1 | Wheat | cytosol | 21.88 | 39.08 |
| TraesCS5A01G461800.1 | Wheat | cytosol | 30.82 | 38.76 |
| TraesCS5A01G040800.1 | Wheat | cytosol | 31.76 | 38.68 |
| TraesCS7A01G511400.1 | Wheat | cytosol | 32.94 | 38.57 |
| TraesCS6A01G275800.1 | Wheat | cytosol | 33.65 | 38.44 |
| TraesCS5A01G361900.1 | Wheat | cytosol | 32.47 | 38.44 |
| TraesCS5A01G041400.1 | Wheat | plastid | 31.76 | 38.35 |
| TraesCS2A01G470400.1 | Wheat | cytosol | 32.47 | 38.23 |
| TraesCS1A01G368600.1 | Wheat | mitochondrion | 31.29 | 38.22 |
| TraesCS5A01G451600.1 | Wheat | cytosol | 31.29 | 38.11 |
| TraesCS2A01G366500.1 | Wheat | cytosol | 32.0 | 37.99 |
| TraesCS2A01G470900.1 | Wheat | cytosol | 31.76 | 37.5 |
| TraesCS2A01G473400.1 | Wheat | cytosol | 27.76 | 37.46 |
| TraesCS3A01G164400.1 | Wheat | cytosol | 21.65 | 37.25 |
| TraesCS7A01G511500.1 | Wheat | cytosol | 32.24 | 37.23 |
| TraesCS2A01G470700.1 | Wheat | cytosol, plastid | 32.47 | 37.2 |
| TraesCS2A01G418000.1 | Wheat | cytosol | 32.0 | 37.06 |
| TraesCS2A01G458700.1 | Wheat | cytosol | 12.71 | 36.99 |
| TraesCS2A01G418100.1 | Wheat | cytosol | 31.76 | 36.68 |
| TraesCS2A01G458500.1 | Wheat | cytosol | 11.29 | 36.09 |
| TraesCS6A01G401700.1 | Wheat | cytosol, mitochondrion, plastid | 29.65 | 35.9 |
| TraesCS5A01G041300.1 | Wheat | cytosol | 29.65 | 35.8 |
| TraesCS6A01G167500.1 | Wheat | plastid | 28.0 | 35.63 |
| TraesCS7A01G511000.1 | Wheat | mitochondrion, plastid | 20.71 | 35.63 |
| TraesCS2A01G217100.1 | Wheat | cytosol | 30.12 | 35.56 |
| TraesCS3A01G212400.1 | Wheat | cytosol | 28.24 | 34.88 |
| TraesCS2A01G473300.1 | Wheat | cytosol | 24.24 | 34.8 |
| TraesCS7A01G550800.1 | Wheat | cytosol | 22.12 | 34.56 |
| TraesCS2A01G473500.1 | Wheat | cytosol | 28.0 | 34.0 |
| TraesCS5A01G041000.1 | Wheat | cytosol, mitochondrion, plastid | 30.59 | 32.18 |
| TraesCS2A01G543600.1 | Wheat | plastid | 18.59 | 29.48 |
| TraesCS2A01G471800.1 | Wheat | mitochondrion | 30.82 | 28.98 |
| TraesCS2A01G471700.1 | Wheat | cytosol | 28.47 | 28.88 |
Protein Annotations
| Gene3D:1.25.40.420 | Gene3D:2.60.210.10 | Gene3D:3.30.710.10 | MapMan:35.1 | InterPro:BPM_C | InterPro:BTB/POZ_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000210 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | PFAM:PF00651 | PFscan:PS50097 | PFscan:PS50144 | PANTHER:PTHR24411 | PANTHER:PTHR24411:SF37 |
| InterPro:SKP1/BTB/POZ_sf | SMART:SM00061 | SMART:SM00225 | SUPFAM:SSF49599 | SUPFAM:SSF54695 | InterPro:TRAF-like |
| EnsemblPlantsGene:TraesCS2A01G135800 | EnsemblPlants:TraesCS2A01G135800.1 | TIGR:cd00121 | TIGR:cd14736 | SEG:seg | : |
Description
No Description!
Coordinates
chr2A:-:81784264..81790220
Molecular Weight (calculated)
46469.6 Da
IEP (calculated)
6.624
GRAVY (calculated)
-0.162
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVGRTSRGG PSTAGRPYFP PISAPAAASS PSPPSPPAPP VETASTSVTK TVNGSHHFKI AGYSLAKGIG VGKYIASESF TVGGFEWAIY FYPDGKSAED
101: GAAYVSLFIA LASEGTDVRA LFELTLVDQS GKGQDKVHTH FGRSLEGGPY TLKYRGSMWG YKRFFKRSGL ETSDYLKDDC LLVNCTVGVV QSHTEGPEIY
201: SIPVPQSDMS QHIGHLLTSG KRTDITFEVD EEMFPAHKVV LAARSPVFRA QLFGPMKDKN MKCIKIEDME APVFKALLHF MYWDELPNIE ELTGLNTTWV
301: STLMAQHLLA AADRYALERL KLLSELKLCE DVAINTVANT LALAEQHHCH QLKTVCLKFV ASPENLKAVM QTEGFDYLQQ SCPSLLTELL EYVAKVGDHA
401: VPPCLYSNEV LDGGDANGRR VKPRL
101: GAAYVSLFIA LASEGTDVRA LFELTLVDQS GKGQDKVHTH FGRSLEGGPY TLKYRGSMWG YKRFFKRSGL ETSDYLKDDC LLVNCTVGVV QSHTEGPEIY
201: SIPVPQSDMS QHIGHLLTSG KRTDITFEVD EEMFPAHKVV LAARSPVFRA QLFGPMKDKN MKCIKIEDME APVFKALLHF MYWDELPNIE ELTGLNTTWV
301: STLMAQHLLA AADRYALERL KLLSELKLCE DVAINTVANT LALAEQHHCH QLKTVCLKFV ASPENLKAVM QTEGFDYLQQ SCPSLLTELL EYVAKVGDHA
401: VPPCLYSNEV LDGGDANGRR VKPRL
001: MGTTRVCSEV SSGSSKSLSQ SLTVSTSTTE TVNGFHEFKI CGYSLAKGVG VGKYVASDTF MVGGYSWAIY FYPDGKSPED NSSYVSLFIA LASEGADVRA
101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG
201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLLHF IYWDELPDMQ ELIGTDSTLA STLVAQHLLA AADRYALERL
301: KAICESKLCE GVAINTVATT LALAEQHHCL QLKAVCLKFV ALPENLKAVM QTDGFDYLKE SCPSLLTELL QYVARLSEHS VIVSGHRKEI FADGCDASGR
401: RVKPRLH
101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG
201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLLHF IYWDELPDMQ ELIGTDSTLA STLVAQHLLA AADRYALERL
301: KAICESKLCE GVAINTVATT LALAEQHHCL QLKAVCLKFV ALPENLKAVM QTDGFDYLKE SCPSLLTELL QYVARLSEHS VIVSGHRKEI FADGCDASGR
401: RVKPRLH
Arabidopsis Description
BPM1BPM1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFC0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.