Factsheet for Bra002200.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92567	Canola	cytosol	97.25	88.61
Bra006489.1-P	Field mustard	cytosol	85.0	84.37
Bra040233.1-P	Field mustard	cytosol	77.25	79.43
Bra001186.1-P	Field mustard	cytosol	79.5	78.91
AT5G19000.2	Thale cress	plastid	84.75	76.7
Bra020764.1-P	Field mustard	cytosol	73.75	76.62
VIT_05s0020g02520.t01	Wine grape	plastid	71.5	70.1
HORVU2Hr1G023850.1	Barley	cytosol, plastid	66.75	68.11
GSMUA_Achr6P23740_001	Banana	plastid	68.0	65.38
GSMUA_Achr6P16160_001	Banana	plastid	67.75	64.99
Zm00001d022366_P001	Maize	plastid	68.25	64.69
EER99824	Sorghum	plastid	68.5	64.32
Zm00001d007068_P001	Maize	plastid	68.25	64.08
Os07t0655300-01	Rice	plastid	69.25	63.82
TraesCS2A01G135800.1	Wheat	mitochondrion, plastid	67.25	63.29
TraesCS2B01G159700.1	Wheat	mitochondrion, plastid	67.25	63.29
TraesCS2D01G138300.1	Wheat	mitochondrion, plastid	67.25	63.29
Solyc01g080250.2.1	Tomato	plastid	63.0	61.92
PGSC0003DMT400011115	Potato	plastid	62.75	61.67
Bra017053.1-P	Field mustard	cytosol	54.5	54.64
Bra000147.1-P	Field mustard	cytosol	51.75	54.19
Bra006591.1-P	Field mustard	plastid	51.0	49.76
Bra036437.1-P	Field mustard	plastid	55.25	49.55
Bra020142.1-P	Field mustard	plastid	48.5	46.75

Protein Annotations

Gene3D:1.25.40.420	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C	InterPro:BTB/POZ_dom
EnsemblPlantsGene:Bra002200	EnsemblPlants:Bra002200.1	EnsemblPlants:Bra002200.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974	UniProt:M4CDB9	InterPro:MATH/TRAF_dom	PFAM:PF00651
PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061
SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI000254535F	:

Description

AT5G19000 (E=2e-197) ATBPM1 | ATBPM1 (BTB-POZ and MATH domain 1); protein binding

Coordinates

chrA10:-:10938903..10941250

Molecular Weight (calculated)

44315.0 Da

IEP (calculated)

7.755

GRAVY (calculated)

-0.179

Length

400 amino acids

Sequence
(BLAST)

001: MGTAEVSGSP TKSPLTVSTS VTETLDGFHE FKISAYSLTK GLGVGKFVAS ETFTVGGYTW AIYFYPDGKG PEDNSTYVSL FIALASEGAD VRALFELTLV
101: DQSGNGKHKV HSHFGRALES GPYTLKYRGS MWGYKRFFKK SSLESSDYMK DNSLLVRCRV GVVKSCTEVQ RNYNIPVPVS NLGQQFGNLL ESGKGCDVTF
201: QVDGETFSAH KLVLAARSPV FRAQLFGPLR DRNTDRVEIE DMESPIFKVL LHFIYWDELP DMQELMGTDS KSASTLVAQH LLAAADRYAL ERLKLICESR
301: LCEGITINTV ATTLALAEQH HCFQLKAVCL KFVSLPENLK AVMQTDGVDY LKKSCPSLLT ELLKYVARLG EHSVSASGYR KEMFADGCDA NGRRVKQRLH

Best Arabidopsis Sequence Match ( AT5G19000.1 )
(BLAST)

001: MGTTRVCSEV SSGSSKSLSQ SLTVSTSTTE TVNGFHEFKI CGYSLAKGVG VGKYVASDTF MVGGYSWAIY FYPDGKSPED NSSYVSLFIA LASEGADVRA
101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG
201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLLHF IYWDELPDMQ ELIGTDSTLA STLVAQHLLA AADRYALERL
301: KAICESKLCE GVAINTVATT LALAEQHHCL QLKAVCLKFV ALPENLKAVM QTDGFDYLKE SCPSLLTELL QYVARLSEHS VIVSGHRKEI FADGCDASGR
401: RVKPRLH

Arabidopsis Description

BPM1BPM1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.